PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22505.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 530aa    MW: 57848.1 Da    PI: 9.154
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22505.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-0590112123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C+k F r  nL+ H r H
  mrna22505.1-v1.0-hybrid  90 FVCEICKKGFQRDQNLQLHRRGH 112
                              89*******************88 PP
2zf-C2H2120.00063166188123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H +t+
  mrna22505.1-v1.0-hybrid 166 WKCDKCSKKYAVQSDWKAHSKTC 188
                              58*****************9998 PP
3zf-C2H211.30.0011196214523
                              TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                              dCg++Fsr++++ +H   +
  mrna22505.1-v1.0-hybrid 196 DCGTVFSRRDSFITHRAFC 214
                              8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-489112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.49E-689112No hitNo description
SMARTSM003550.03990112IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.63790112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355220131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-4154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.49E-6161186No hitNo description
SMARTSM00355150166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MSTITGSGVG SFSSGNTTSA DEVLQQQQQE LLNHFHGSDS LQEITVNGTS ATQQQQPPPA  60
KKKRNLPGTP DPSAEVIALS PKTLMATNRF VCEICKKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RSSTEIRKRV YVCPEPSCVH HEPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD  180
WKAHSKTCGT REYKCDCGTV FSRRDSFITH RAFCDAIAEE NKTSVQGQGV VLMSNNLGQQ  240
NLQQGGQLVS GGELMIPASV PMSNTETATA NPSTSSKTSN HFDHFDTKNP NLTLVPQGVP  300
SNMLLSSPRS GLHNNSLSSS TSSALFHNHL GHQVLLPSSI SGHLSATELL LKASQMGATM  360
SSNYNSSGMS MAPSTYGDFS RYVNNQFMQQ KNGNNIPVQQ TSSQFFGASN GNMGMFSGLL  420
FDQSNRELMK NMEQSVNGRN NNNNNNNTSN GLSLHGKNVS RGGDTMTVDF LGVGRERGGG  480
GGGGGGGNRP ESFHDHQQRQ VLHDEQQRQI KQQEEDDNQS ATNFGWSWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-32162220361Zinc finger protein JACKDAW
5b3h_F1e-32162220361Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22505.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1165451e-168AB116545.1 Malus x domestica MdZF1 mRNA for zinc finger protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302410.10.0PREDICTED: protein indeterminate-domain 2-like
TrEMBLA0A2P6R7150.0A0A2P6R715_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004302410.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-100C2H2 family protein