PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna22490.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 317aa MW: 33526.2 Da PI: 9.6069

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna22490.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.3	4.3e-06	284	309	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR ri ++ +L++l+P+ + mrna22490.1-v1.0-hybrid 284 SIAERERRTRISGKLKKLQDLVPNmD 309 689********************944 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.604	278	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-5	281	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.87E-4	282	312	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.8E-5	283	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010119	Biological Process	regulation of stomatal movement
GO:0005829	Cellular Component	cytosol
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009005	anatomy	root
PO:0007134	developmental stage	sporophyte vegetative stage

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MYPSSSSSSS QNPMGPSPTG LTRYGSAPGS LITSAVDSVI AEREFSSLRP HPPSSFVGRY 60 FPGGDGDSSS LTSSESTFKI NGKETATKKP LVRSYGLGEM AAAIGSSSST SCSSSALVRQ 120 RSSPAGFLSH LTDNNGGFSV TRGTGSYSSQ GGPNGGHGVT RLKSQLSFTR QDSLSQISEV 180 SENAGEGVSS NSGHHSSMHS YPATSFGMES WDNTNSIVFS APPSKRAKNM DGDIFNCLNT 240 LESQFSLPQT TLEMATVEKL LHIPEDSVPC KIRAKRGCAT HPRSIAERER RTRISGKLKK 300 LQDLVPNMDK VKTTNL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna22490.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004296710.1	0.0	PREDICTED: transcription factor bHLH128 isoform X1
Swissprot	Q8H102	1e-77	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A498K4W7	1e-167	A0A498K4W7_MALDO; Uncharacterized protein
STRING	XP_004296710.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7680	31	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	9e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna22490.1-v1.0-hybrid

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]