PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22446.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C2H2 | ||||||||
Protein Properties | Length: 313aa MW: 34140.8 Da PI: 7.9734 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.7e-05 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++ Fs++ L H++ H mrna22446.1-v1.0-hybrid 93 FKCNFCNRNFSTSQALGGHQNAH 115 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.56E-7 | 90 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 91 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.988 | 93 | 120 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MEKPILLEVC ANSSEASSII SAASEKKKNT MKMKEINVDD ESQQPGKPEV LVAAANVELA 60 LFKDNPPPEE EASEEINGKR GQQKKEKEET RVFKCNFCNR NFSTSQALGG HQNAHKPERQ 120 LAKRRSQGLD AGGGIGLGQS YYPYNFSPYS SSTFSPHYSL YGSRSTSSLG VRLDSMIHKP 180 AYTPWYDRLG GGGGWSRPAS SSLLQNHSNN DHRLIIQQGL KNNINTNELG LGVRKFNASS 240 RLEESSTIST GAFRNIGGGT WNLNAINNNN NSNNEPPQTP PLSGSTDLLS QVERPPKCDK 300 DGDNDIDLTL KL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22446.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463584.1 | 0.0 | PREDICTED: zinc finger protein 4-like | ||||
TrEMBL | A0A2P6SAW6 | 9e-58 | A0A2P6SAW6_ROSCH; Putative transcription factor C2H2 family |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 1e-13 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna22446.1-v1.0-hybrid |