PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22412.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 285aa    MW: 31750.6 Da    PI: 7.7877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22412.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.27.5e-15215239226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ktelC+ ++++G C+yGd+C+FaHg
  mrna22412.1-v1.0-hybrid 215 KTELCNKWQESGACPYGDNCQFAHG 239
                              8***********************9 PP
2zf-CCCH25.71.9e-08252277126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              ykt +Cr  + +GtC+yG rC+F H+
  mrna22412.1-v1.0-hybrid 252 YKTQICRMVLTGGTCPYGHRCHFRHS 277
                              9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.4E-18209246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-11211245IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-8213240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.798213241IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-12215239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-13247280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-9247282IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-6251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718251279IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-5252277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
METNSTSTPS SNSTSSDFAS SMYSCSIFPP KFTLPNSLSL TPSTLSDEDG DHRHEDCNTM  60
HRLGQAQLVL ECEELRDHLR KLNNEADSLR RENAVLRSAN TGLVKLLKNL FNASSYVNHP  120
FMADELKPLG FGVFSPRDGD EASDISPTSV IMEQKRFNAD RFSLPKSISV LSSSSGYNNQ  180
PPLHEGLARV ADQEGASGAM QVKKAKAWYN QGMVKTELCN KWQESGACPY GDNCQFAHGV  240
RELRPVMRHP RYKTQICRMV LTGGTCPYGH RCHFRHSLND HQHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-23215280570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22412.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004296733.20.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ9C9N34e-55C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P6QUN51e-143A0A2P6QUN5_ROSCH; Putative transcription factor C3H family
STRINGXP_004296733.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.28e-45C3H family protein