PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22411.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 165aa MW: 18551.2 Da PI: 6.501 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 89.5 | 3.2e-28 | 69 | 138 | 27 | 95 |
NF-YC 27 kkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi.fdflvdi 95 +i+k+++ vkmis+e+P+l+skacelfi+eltlr+wl++e +k+rtl+k+dia+a+ + + + fl i mrna22411.1-v1.0-hybrid 69 ERIMKSNDVVKMISSETPILFSKACELFIMELTLRAWLQTEASKKRTLQKCDIAKAIRKDQLlHHFLAPI 138 69*******************************************************9876416677665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 9.9E-14 | 69 | 125 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 8.55E-18 | 69 | 137 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-22 | 70 | 126 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MNPSNNSHPP PPTPQVFHNF MPTSSSLLPD STQEEAEAAR CTNLVQLEKN NVQLFCVKEL 60 PSTTSCSGER IMKSNDVVKM ISSETPILFS KACELFIMEL TLRAWLQTEA SKKRTLQKCD 120 IAKAIRKDQL LHHFLAPIVL CTLHYDHDDD DDSENATPRK KRVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_B | 4e-20 | 52 | 139 | 12 | 95 | NF-YC |
4awl_C | 4e-20 | 52 | 139 | 9 | 92 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA |
4csr_B | 4e-20 | 52 | 139 | 9 | 92 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22411.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024191896.1 | 2e-62 | nuclear transcription factor Y subunit C-1-like | ||||
TrEMBL | A0A2P6QUM4 | 4e-42 | A0A2P6QUM4_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_010108900.1 | 5e-37 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14399 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 7e-23 | nuclear factor Y, subunit C1 |
Link Out ? help Back to Top | |
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Phytozome | mrna22411.1-v1.0-hybrid |