PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22263.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 220aa MW: 25470.4 Da PI: 5.2774 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 86.2 | 6.1e-27 | 7 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknrat 78 lppG++F+P e+l+v+yL++k++g+++ e ++ +d+y k ePw++ + ++++e++++yfF++ ++k+++gk+ +r++ mrna22263.1-v1.0-hybrid 7 LPPGYKFRPDKEQLLVHYLRPKLDGEDFAQ-ELVPFCDLYgKKEPWQIWNdyfqelsATDKERTDLYFFTQLKTKTPKGKHIKRTV 91 79*************************988.89*****99456*****644566554333355588******************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wk kevl+++++++g ++ + + +++ ++++ +W+mhe++l mrna22263.1-v1.0-hybrid 92 GSGTWKGEDAPKEVLAASQRVIGKRRRFRYG-NDKDSAQNDRWLMHEFEL 140 *****************************98.6777889*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-30 | 6 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.606 | 7 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.7E-17 | 8 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MAVDDDLPPG YKFRPDKEQL LVHYLRPKLD GEDFAQELVP FCDLYGKKEP WQIWNDYFQE 60 LSATDKERTD LYFFTQLKTK TPKGKHIKRT VGSGTWKGED APKEVLAASQ RVIGKRRRFR 120 YGNDKDSAQN DRWLMHEFEL DASLLRNKRK AKDYVLCIVR KKSRSVKKNS EDQEGDETSC 180 DGGDDQQDGD LPEAKKNNDH KDSETVSLEE MENLLMSDD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-21 | 6 | 168 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-21 | 6 | 168 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-21 | 6 | 168 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-21 | 6 | 168 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-21 | 6 | 168 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-21 | 6 | 168 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22263.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004298024.2 | 1e-162 | PREDICTED: NAC domain-containing protein 19-like | ||||
TrEMBL | A0A314XVL4 | 3e-49 | A0A314XVL4_PRUYE; Uncharacterized protein | ||||
STRING | XP_004298024.1 | 1e-161 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52890.1 | 2e-20 | NAC domain containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | mrna22263.1-v1.0-hybrid |