PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22175.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 429aa    MW: 47273 Da    PI: 7.1686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22175.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-1753102255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +gr++AeIrdp     +   r +lg+f+taeeAa a++ a+++++g
  mrna22175.1-v1.0-hybrid  53 RYRGVRRRP-WGRYAAEIRDP-----HskERRWLGTFDTAEEAACAYDCAARAMRG 102
                              69*******.**********6.....335999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.91853110IPR001471AP2/ERF domain
PfamPF008471.7E-1053102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2953109IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-2153110IPR016177DNA-binding domain
CDDcd000188.50E-3053109No hitNo description
SMARTSM003803.9E-3253116IPR001471AP2/ERF domain
PRINTSPR003672.6E-95465IPR001471AP2/ERF domain
PRINTSPR003672.6E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEEAFRKLNG FTPTSQPDVP ISIPSKKSNP TAATTTNKRS LKEATAGSAS TLRYRGVRRR  60
PWGRYAAEIR DPHSKERRWL GTFDTAEEAA CAYDCAARAM RGVKARTNFV YPATTQDHLV  120
PAFTFHHQKQ SQPSVKYHST ARGYGQIVPN WPPFATYPHD FSGNSDRSGT TANSANSTTA  180
SLNMLFLRNF INNNSIPSQN QNPSSVGSPN PPPHSQAQSF SQNQFQYTNG SSSPNFPASG  240
CNSFVNNNTT TSCTTTSHGN SSSSIMMNGT SISCATLHET PTKAIVTSTG FVDSDFLPIE  300
SSDSGLLEEV IHQFFPKPFS KESNPRKSVE SFPGTSFDLR VQQPSLDVKE VQQPRVCPGE  360
FDYQQEQEQQ HLGSFNGVLE VAEQTVPLYN DLPVNFQMNS ADHSMVAMDH NLFQQYYYPE  420
FLGSLQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-19531091471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22175.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004301056.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A3S8T9360.0A0A3S8T936_FRAAN; Transcription factor ERF65
STRINGXP_004301056.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-14DORNROSCHEN-like