PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22175.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 429aa MW: 47273 Da PI: 7.1686 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.6e-17 | 53 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g mrna22175.1-v1.0-hybrid 53 RYRGVRRRP-WGRYAAEIRDP-----HskERRWLGTFDTAEEAACAYDCAARAMRG 102 69*******.**********6.....335999**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.918 | 53 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-10 | 53 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-29 | 53 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.3E-21 | 53 | 110 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.50E-30 | 53 | 109 | No hit | No description |
SMART | SM00380 | 3.9E-32 | 53 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MEEAFRKLNG FTPTSQPDVP ISIPSKKSNP TAATTTNKRS LKEATAGSAS TLRYRGVRRR 60 PWGRYAAEIR DPHSKERRWL GTFDTAEEAA CAYDCAARAM RGVKARTNFV YPATTQDHLV 120 PAFTFHHQKQ SQPSVKYHST ARGYGQIVPN WPPFATYPHD FSGNSDRSGT TANSANSTTA 180 SLNMLFLRNF INNNSIPSQN QNPSSVGSPN PPPHSQAQSF SQNQFQYTNG SSSPNFPASG 240 CNSFVNNNTT TSCTTTSHGN SSSSIMMNGT SISCATLHET PTKAIVTSTG FVDSDFLPIE 300 SSDSGLLEEV IHQFFPKPFS KESNPRKSVE SFPGTSFDLR VQQPSLDVKE VQQPRVCPGE 360 FDYQQEQEQQ HLGSFNGVLE VAEQTVPLYN DLPVNFQMNS ADHSMVAMDH NLFQQYYYPE 420 FLGSLQNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 53 | 109 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22175.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004301056.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A3S8T936 | 0.0 | A0A3S8T936_FRAAN; Transcription factor ERF65 | ||||
STRING | XP_004301056.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-14 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | mrna22175.1-v1.0-hybrid |