PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22167.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 113aa    MW: 12428.6 Da    PI: 4.5444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22167.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-071558344
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             +WT+   + +  a +++ ++   +W+ Iar +g ++t++++k ++
  mrna22167.1-v1.0-hybrid 15 SWTAKQNKTFEIALALFSKDtpdRWDNIARIVG-NKTPEEVKRHY 58
                             7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.0E-51264IPR001005SANT/Myb domain
SuperFamilySSF466897.57E-121470IPR009057Homeodomain-like
PROSITE profilePS500906.1441462IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.8E-51566IPR009057Homeodomain-like
CDDcd001671.69E-51662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MASDGSMSSL NSDSSWTAKQ NKTFEIALAL FSKDTPDRWD NIARIVGNKT PEEVKRHYDL  60
LLEDVKLIES GEVPFPDYRT SGGSGNGHGK EDDEPEAPLN DQHKEKSHEA VL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-32884379RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22167.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304977.11e-78PREDICTED: protein RADIALIS-like 4
SwissprotF4JVB81e-33RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A2P6R7445e-40A0A2P6R744_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004304977.16e-78(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-35RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]