PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22114.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 373aa MW: 40638.1 Da PI: 6.1741 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 172 | 221 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g mrna22114.1-v1.0-hybrid 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 221 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-33 | 171 | 231 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 172 | 230 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 172 | 229 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-37 | 172 | 235 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-23 | 172 | 230 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.7E-11 | 173 | 184 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-14 | 173 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-11 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MAAMDFYSSI PLQSSSDPFT GELMEALEPF MKSASPPPPL SSSSFDFNPS IPTPSSSYSS 60 SPTPFLPSTS SPSSSYDYLS FSPSIPTPQP GLFQDGCSTF NMGFEQQGSI GLNHLTSSQI 120 HQIQTQFQFQ NQPQMAWQQS YQQPQPSHTL SFLSPKPVPM KQSGSPPKPT KLYRGVRQRH 180 WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPH LKHTGSVVGG 240 EFGEYKPLHS SVDAKLQAIC EGLAESQKQG KAGKQAGGAK KSSAARTKPK STPVPEPEPE 300 PEALTVKEET SSLSPVRTDS DGSAGSSPLS DLTFADYSES SSPWENNGSE SYLLEKYPSE 360 IDWASIFNQN SN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 171 | 229 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22114.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL022605 | 7e-32 | AL022605.3 Arabidopsis thaliana DNA chromosome 4, BAC clone T19P19 (ESSA project). | |||
GenBank | AL161595 | 7e-32 | AL161595.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91. | |||
GenBank | AY560850 | 7e-32 | AY560850.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g39780) mRNA, complete cds. | |||
GenBank | BT025719 | 7e-32 | BT025719.1 Arabidopsis thaliana At4g39780 mRNA, complete cds. | |||
GenBank | CP002687 | 7e-32 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299631.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 2e-87 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A3Q8TB03 | 0.0 | A0A3Q8TB03_FRAAN; Transcription factor ERF5 | ||||
STRING | XP_004299631.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-63 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | mrna22114.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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