PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22097.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 381aa    MW: 43694 Da    PI: 4.4176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22097.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM483.9e-15181376117
                      NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiyk...vePwdLpkkvka.....eekewyfFskrdkkyatgkrknr.atksgy 82 
                               F+P+d elv  yL+ kv  ++ +   +++e++iy    + Pw++ + +++     +++ +yfFs+++k ++++ r++r + ++gy
  mrna22097.1-v1.0-hybrid  18 TFQPSDAELVGVYLHSKVFVSTYKQ--TFPEIRIYGkdgMPPWEIWR-IYQqsrfpHQDFIYFFSPAEKMNPNKARQSRkVGTDGY 100
                              6******************999666..56777776512268****73.3331233333456******************5555787 PP

                      NAM  83 .Wkatgkdkevlsk.kgelvglkktLvfykgrapkge 117
                               W+at + k+++++ ++e+ g  +   f k+++++ +
  mrna22097.1-v1.0-hybrid 101 tWSATERVKPIYVAgNEEAFGSLRKYRFEKKENKDEK 137
                              8***********9865566777777777643333322 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-159172IPR003441NAC domain
PROSITE profilePS5100516.64413174IPR003441NAC domain
PfamPF023652.1E-818157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDQQFATLDQ LSVGVVTTFQ PSDAELVGVY LHSKVFVSTY KQTFPEIRIY GKDGMPPWEI  60
WRIYQQSRFP HQDFIYFFSP AEKMNPNKAR QSRKVGTDGY TWSATERVKP IYVAGNEEAF  120
GSLRKYRFEK KENKDEKKEQ VANQSDDEHH GAWLMDECNI NQAPDLALCR LKVNEKGGDR  180
KRKSYAVEKS IEEDQSLRSK KRKLEPRRSL SEQQQGTTSQ QMPSSYLHQD DQVAQVVPEN  240
NFPAELEQIL MSDDDDDENL LLSPTAVLWN DTQLRACGAQ SIPNEQQPQP EQHSEYSVAP  300
QQQLQPESSS SQEEYEVQLP QQDEASSSHS NEQQQLLADN IIISMIDFDS LDDTCFQSIN  360
GVFTDEDHPS NQSWWHLDGD *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180202KRKSYAVEKSIEEDQSLRSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22097.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464579.10.0PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464580.10.0PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464581.10.0PREDICTED: NAC domain-containing protein 102-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1646726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.14e-07NAC family protein