PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22095.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 435aa    MW: 49983.2 Da    PI: 5.0683
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22095.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.34.6e-17762146127
                      NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWk 84 
                               F+P++ +lv +yL +kv +++ +   ++++++iy      Pw++ +   ++k  +++ +yfFs+++k +++++r++r++ +g+W+
  mrna22095.1-v1.0-hybrid  76 TFQPSEAQLVRHYLYNKVFNDDPSS--TFPQINIYGKdglPPWEIWRiyqQCKYpHQEFIYFFSRAEKLNPNKTRHSRKIGTGTWH 159
                              6*****************9999665..57777777542227****632333333244455************************** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkge...........ktdWvmheyr 127
                              +t + ++++++  +e+ g  + + + k+++++ +           +  W+m+e++
  mrna22095.1-v1.0-hybrid 160 ETENVRPIYVAgYEEAYGSLRKFRYQKKESKNEKdkkerdicdehHGAWLMDEFT 214
                              **********966677999999999953332222222333444446778888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-1965226IPR003441NAC domain
PROSITE profilePS5100516.03271231IPR003441NAC domain
PfamPF023652.2E-1176214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEDKTLTLAE AEAQQSRKAI RSIKVALRLK PSSADRPLTA ATDHRGAATN LRFYSEIVMD  60
QQFATLAELS VGVVTTFQPS EAQLVRHYLY NKVFNDDPSS TFPQINIYGK DGLPPWEIWR  120
IYQQCKYPHQ EFIYFFSRAE KLNPNKTRHS RKIGTGTWHE TENVRPIYVA GYEEAYGSLR  180
KFRYQKKESK NEKDKKERDI CDEHHGAWLM DEFTINQAPD LALYRLKVNA KGGDRKRKSS  240
AAENNGEDES LMRSKQSLKK RKLEPRRAVQ NSCMSEHQQS TTSQQMPSSY FHQVDQVVPE  300
NFPHEIEQIL MSDDDDDENL STTALLWNEA QLRACVARSI PDEQHPQPEQ YSVAPQQQLG  360
PESSSSQEEY QVQLPQQDQA SSSHSNEQQL LADDYQISMI DFDSLDDTCF QSINGLFTDE  420
DQPSTQSWWH LDGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22095.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464579.10.0PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464580.10.0PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464581.10.0PREDICTED: NAC domain-containing protein 102-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1646726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-07NAC-domain protein 101