PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22092.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 434aa    MW: 49275.6 Da    PI: 4.5442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22092.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.86.9e-13992357128
                      NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpkkvka....eekewyfFskrdkkyatgkrknratk....sg 81 
                              F+P+d elv +yL ++v + + + +++++e+ iy      Pw++ + +++    +++ +yfFs+++k ++++ r++r +      g
  mrna22092.1-v1.0-hybrid  99 FQPSDAELVGHYLYNQVFTPSSTSKQIFPEICIYGKdalPPWEIWRVYQQsrfpNQDFIYFFSPAEKMNPNKARHSRRVGtdgkLG 184
                              9*******************99998999**9999652227****743222233333456*************99999533234468 PP

                      NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkge......ktdWvmheyrl 128
                              +W++  +  +v    +e+ g+ + + + k++++k +      +  W+m+e+++
  mrna22092.1-v1.0-hybrid 185 TWSEVNS-FHVDG-VQEVFGTLRKFRYEKKKNKKEVditdehHGAWLMDEFTI 235
                              8987655.44444.6778999999999976555544444444778*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-1490247IPR003441NAC domain
PROSITE profilePS5100515.20393251IPR003441NAC domain
PfamPF023651.3E-1099234IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MCSWKRWEGG NSSKKSLKLV GKPSSADRRN QPPRRCYGRV CCSNRFIGDD DFVAPEDLKR  60
EIGDLKMEVV TCEGAAEEQE DQAVFATLDE LNVGVVTIFQ PSDAELVGHY LYNQVFTPSS  120
TSKQIFPEIC IYGKDALPPW EIWRVYQQSR FPNQDFIYFF SPAEKMNPNK ARHSRRVGTD  180
GKLGTWSEVN SFHVDGVQEV FGTLRKFRYE KKKNKKEVDI TDEHHGAWLM DEFTINHAPD  240
LALCRIKVNE KGGDRGGMKR KNIEEDEILT SKKRKGQNSC TTSQQMPSSY FHQDDQVVVP  300
ENNFPDELAQ ILMSDDDDDD DENLSPTAVL WNEAELRACV AQSIPNEQHS VVPQQQLGPD  360
ESSSSQEEYA VQLPQPDQAS SSHSNEQQQL LADNHNLISM IDFDSLDDTC LQSINGLFTD  420
EDQPSTQLWW HLV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258274KRKNIEEDEILTSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22092.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464585.10.0PREDICTED: NAC domain-containing protein 2-like isoform X5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1646726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.13e-08NAC family protein