PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22039.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 300aa    MW: 33988.4 Da    PI: 10.3537
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22039.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16621401799
                              E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                       B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                              ++p  f ++ +++ ++   l+l+++s  sW+v +  +k+++ ++l++GW+eF ++n L + +f+vF++d+++ f  ++ +f+k
  mrna22039.1-v1.0-hybrid  62 RIPPAFRKHVSHELTKRAILKLKNSSESSWTVIV--SKTGRDIYLKDGWQEFLRDNALGDSEFLVFRYDKHMHF--TINIFDK 140
                              6888886544555556779***************..********************************999999..9999987 PP

2B344.82.2e-142172981198
                              HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ks+++ +p +f  +++ ++++  + ++  +s  +++v+l    + ++++l++GW++F kan L++gD+++F+l++  e +++v++
  mrna22039.1-v1.0-hybrid 217 KKSRMVAIPTHFY-KIMFPSRKY-DNIFLVTSKGKFTVTL--ITCANTMMLSGGWSSFRKANLLQVGDICIFELVK--ENTMKVHI 296
                              4556668999999.775555454.455555577789****..888889*************************986..66689*** PP

                              E- CS
                       B3  97 fr 98 
                              fr
  mrna22039.1-v1.0-hybrid 297 FR 298
                              98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-1920142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1743142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.74446141IPR003340B3 DNA binding domain
SMARTSM010192.7E-647141IPR003340B3 DNA binding domain
PfamPF023623.4E-1462140IPR003340B3 DNA binding domain
CDDcd100171.39E-1062139No hitNo description
Gene3DG3DSA:2.40.330.103.8E-20204298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-20205298IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.306207299IPR003340B3 DNA binding domain
CDDcd100176.32E-16212298No hitNo description
SMARTSM010192.5E-7212299IPR003340B3 DNA binding domain
PfamPF023621.6E-12217299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MARRASTSLP FHVGGVEEEE NGPTFFKIIK PGFNTEHLVS DFKPYHLFNF MNPALNIIAV  60
TRIPPAFRKH VSHELTKRAI LKLKNSSESS WTVIVSKTGR DIYLKDGWQE FLRDNALGDS  120
EFLVFRYDKH MHFTINIFDK NCVERVNVAD LRACESSIFS DSSKRPLARP PTAAGNHRYD  180
LVAEAAKGLK SKGEHLPSCA AAAAFKSKFP WFTKVLKKSR MVAIPTHFYK IMFPSRKYDN  240
IFLVTSKGKF TVTLITCANT MMLSGGWSSF RKANLLQVGD ICIFELVKEN TMKVHIFRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22039.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289560.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A2P6QZ611e-146A0A2P6QZ61_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004289560.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14202819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.13e-18VERDANDI