PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22039.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | B3 | ||||||||
Protein Properties | Length: 300aa MW: 33988.4 Da PI: 10.3537 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.9 | 2.8e-16 | 62 | 140 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++p f ++ +++ ++ l+l+++s sW+v + +k+++ ++l++GW+eF ++n L + +f+vF++d+++ f ++ +f+k mrna22039.1-v1.0-hybrid 62 RIPPAFRKHVSHELTKRAILKLKNSSESSWTVIV--SKTGRDIYLKDGWQEFLRDNALGDSEFLVFRYDKHMHF--TINIFDK 140 6888886544555556779***************..********************************999999..9999987 PP | |||||||
2 | B3 | 44.8 | 2.2e-14 | 217 | 298 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ks+++ +p +f +++ ++++ + ++ +s +++v+l + ++++l++GW++F kan L++gD+++F+l++ e +++v++ mrna22039.1-v1.0-hybrid 217 KKSRMVAIPTHFY-KIMFPSRKY-DNIFLVTSKGKFTVTL--ITCANTMMLSGGWSSFRKANLLQVGDICIFELVK--ENTMKVHI 296 4556668999999.775555454.455555577789****..888889*************************986..66689*** PP E- CS B3 97 fr 98 fr mrna22039.1-v1.0-hybrid 297 FR 298 98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-19 | 20 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 43 | 142 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.744 | 46 | 141 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-6 | 47 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-14 | 62 | 140 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.39E-10 | 62 | 139 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-20 | 204 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-20 | 205 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.306 | 207 | 299 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.32E-16 | 212 | 298 | No hit | No description |
SMART | SM01019 | 2.5E-7 | 212 | 299 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-12 | 217 | 299 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MARRASTSLP FHVGGVEEEE NGPTFFKIIK PGFNTEHLVS DFKPYHLFNF MNPALNIIAV 60 TRIPPAFRKH VSHELTKRAI LKLKNSSESS WTVIVSKTGR DIYLKDGWQE FLRDNALGDS 120 EFLVFRYDKH MHFTINIFDK NCVERVNVAD LRACESSIFS DSSKRPLARP PTAAGNHRYD 180 LVAEAAKGLK SKGEHLPSCA AAAAFKSKFP WFTKVLKKSR MVAIPTHFYK IMFPSRKYDN 240 IFLVTSKGKF TVTLITCANT MMLSGGWSSF RKANLLQVGD ICIFELVKEN TMKVHIFRN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22039.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004289560.1 | 0.0 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A2P6QZ61 | 1e-146 | A0A2P6QZ61_ROSCH; Putative transcription factor B3-Domain family | ||||
STRING | XP_004289560.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14202 | 8 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 3e-18 | VERDANDI |
Link Out ? help Back to Top | |
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Phytozome | mrna22039.1-v1.0-hybrid |