PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna22024.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

WRKY

Protein Properties

Length: 191aa MW: 21522.8 Da PI: 6.3875

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna22024.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94	1.1e-29	94	152	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K vk+s++pr+YY+C+s gC vkk+ver++ed ++v++tYeg Hnh+ mrna22024.1-v1.0-hybrid 94 MDDGFKWRKYGKKYVKNSPNPRNYYKCSSVGCDVKKRVEREKEDSSYVITTYEGMHNHD 152 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-32	80	154	IPR003657	WRKY domain
SuperFamily	SSF118290	6.8E-28	86	154	IPR003657	WRKY domain
PROSITE profile	PS50811	31.227	89	154	IPR003657	WRKY domain
SMART	SM00774	6.6E-33	94	153	IPR003657	WRKY domain
Pfam	PF03106	3.4E-23	95	152	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDSNPSWMNC GQFGENQLDQ NSMGFDELSE YLMLDYRVDD YQDSSSLMSM ISPETCHGTA 60 AGCGSTMKNS MREGGHAHRG HRVAFRTKSE LEIMDDGFKW RKYGKKYVKN SPNPRNYYKC 120 SSVGCDVKKR VEREKEDSSY VITTYEGMHN HDTPNCVQLH FNPASLVVDV DPNNIWTTTL 180 RASSQSSAST *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-26	84	154	7	77	Probable WRKY transcription factor 4
2lex_A	6e-26	84	154	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna22024.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004288553.1	1e-140	PREDICTED: probable WRKY transcription factor 51
Swissprot	Q93WU9	2e-40	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A2P6RRF9	1e-69	A0A2P6RRF9_ROSCH; Putative transcription factor FAR family
STRING	XP_004288553.1	1e-140	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	7e-43	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	mrna22024.1-v1.0-hybrid

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]