PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21882.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 632aa    MW: 70226 Da    PI: 7.1376
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21882.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.2e-10167207545
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                              k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  mrna21882.1-v1.0-hybrid 167 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 207
                              788*************************9777776666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.6E-9163226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415165209IPR004827Basic-leucine zipper domain
PfamPF001701.1E-6167207IPR004827Basic-leucine zipper domain
CDDcd147084.90E-25167219No hitNo description
SuperFamilySSF579591.06E-6167210No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-7168211No hitNo description
PROSITE patternPS000360170185IPR004827Basic-leucine zipper domain
PfamPF141447.0E-32249324IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MGSRTVKIGS NDGDKLVTEM PSFVTPVRMI SVFSGTEGGS IRSSRISDFE RLEQTLGFNI  60
EDAVDIGRSP VYDQNTSTSR ASGAKDVQFG ALNKLLPQKE LQPNLVAVSR SNHENWGESN  120
MADGSPRTDT STDDTEDKNQ MIERNQMAGL LASDSSDRSK EKPGDQKTLR RLAQNREAAR  180
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQAHSMSGN GALAFDVEYA  240
RWLEEHNKQI NELRAAVNSH AGDTELRTVI DNVIAHYDDI FRIKGTAAKA DVFHILSGMW  300
KTPAERCFMW IGGFRSSELL KLLVRQLEPL TEQQVMGIYN LQQSSQQAED ALSQGMEALQ  360
QSLSETLASG SPGPSGTSGN VANYMGQMAM AMGKLGTLEG FLRQADNLRQ QTLQQMHRIL  420
TTRQSARALL AINDYFSRLR ALSSLWLARP REISKKDIDT QCPFCDEEVE SSLHALRDCV  480
HSSSFFQLAN HPSHISAPTI ADWLVFFTQR NTSFATVLMI IWAIWINRNT KVWDNEAKPT  540
SEVALSILGW YAEYSKVHVR NNVPIQVPRV GWQKLPSGMV KLNVDAVFDN PNSLTGVGGV  600
FRDANGTFLL GFSAFFTSCS LYTACRTSDT D*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21882.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467317.10.0PREDICTED: transcription factor HBP-1b(c38)-like isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2P6RTL10.0A0A2P6RTL1_ROSCH; Putative transcription factor bZIP family
STRINGXP_004303596.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-154TGACG motif-binding factor 6