PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21872.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 269aa    MW: 30316.6 Da    PI: 4.7048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21872.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM79.48e-2551342128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiy.kvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratks 80 
                               +GfrFhPt+ elv ++L+++++  + ++  +v++++d + k+ePw +        + +e +++yfF++r++ + tgkr nr++ s
  mrna21872.1-v1.0-hybrid   5 RVGFRFHPTERELVGYFLRNRASMGSeFRPGTVVERLDFFgKTEPWVIWDshggpGL-EEGESLYFFTERHRLHGTGKRFNRKVGS 89 
                              68******************98776646666789999965389*****632343322.255678********************** PP

                      NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g+W+a+    +v + +ge++g+k+ + + +g++p+ ++  W+m+e+++
  mrna21872.1-v1.0-hybrid  90 GTWSAQRP-LKVEQ-NGEVIGMKREFRYERGSHPD-QNNCWLMQEFEM 134
                              ****9865.66777.999****************9.7889******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-262147IPR003441NAC domain
PROSITE profilePS5100526.064160IPR003441NAC domain
PfamPF023653.7E-176133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQGLRVGFRF HPTERELVGY FLRNRASMGS EFRPGTVVER LDFFGKTEPW VIWDSHGGPG  60
LEEGESLYFF TERHRLHGTG KRFNRKVGSG TWSAQRPLKV EQNGEVIGMK REFRYERGSH  120
PDQNNCWLMQ EFEMDVNDSL VLCTLRKNPS PAVVVAVQES NTTRKRNDRC GNDDSNDLKR  180
LRLDQPTSIS TAEVENLSHS DCEVGNVSNS VCDVYFTQWL QMVLDEDPIS DALLDECLGG  240
TSGLPSINDP SLFDDTNDAN ADSFSLIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21872.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458551.18e-83PREDICTED: uncharacterized protein LOC101298970 isoform X2
TrEMBLA0A2P6R6W01e-52A0A2P6R6W0_ROSCH; Putative transcription factor NAM family
STRINGXP_004292554.11e-177(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1761026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-20vascular related NAC-domain protein 7