PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21861.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TALE
Protein Properties Length: 671aa    MW: 73882.8 Da    PI: 5.8778
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21861.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094224591954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  mrna21861.1-v1.0-hybrid 422 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 459
                              664459******************************88 PP
2BELL127.54.8e-41284355172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              e+qelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag g+akpYt++Al++iSrhFrcL+dai++qi
  mrna21861.1-v1.0-hybrid 284 EKQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGSGAAKPYTAVALQTISRHFRCLRDAITGQI 355
                              689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.6E-62202353IPR006563POX domain
PfamPF075266.8E-51208352IPR006563POX domain
PROSITE profilePS5007112.163400463IPR001356Homeobox domain
CDDcd000865.76E-13403464No hitNo description
SMARTSM003891.0E-9403467IPR001356Homeobox domain
SuperFamilySSF466892.52E-17404470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-29406469IPR009057Homeodomain-like
PfamPF059204.5E-18420459IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MATYYSNLND QKDGTPMLYS REPLTSSYPE TPVLPGNMMM YMNSGSYSDA LAGSSQQQNN  60
CIEVVPSVGA SDSNTQQQDV LSHLGGSRIG EQGFNAWRDS RNEMLVTNPM NGSAAILHGG  120
QNLQGQGLSL SLSSGMQVPS MSYRNPNMGF ASFLSPNPSL PSEGRNGSFR DDQPRNVEYL  180
QPSFPGGNAD SSKGDLSPYG MSSIARNIPN SKYLKAAQQL LDEVVNVQKA LKQHDREKNE  240
SANEHTMKSF KEGDDRSKNE LESGESSNPQ ESASNSPFEL SHAEKQELQN KLTKLLSMLD  300
EVDRRYKQYY HQMQIVVSSF DVIAGSGAAK PYTAVALQTI SRHFRCLRDA ITGQIRATQK  360
SLGEQGTSGS IKGVGITRLR YVDQQLRQQR ALQQLGMMQQ HAWRPQRGLP ESSVSILRAW  420
LFEHFLHPYP KDSDKIMLAR QTGLTRSQVS NWFINARVRL WKPMVEEMYK EEAGDAEMDS  480
NSSSENAAQT KKGEKRTLED GGEDMQPSAS STGTDRCSTG QFMDSKSEHY DVEIAGSAGS  540
VSFQNGTRRE GEAEFGLVKL RQGERPGMDE SSFFSDGMIQ SDRSSERFMP AYHMPELGRF  600
GSGSGVSLTL GLQHCEGGNI PISSGTPHSF VAMRDDDLYN AAASSVGTET ADFDQQHRFG  660
PSHLLRDFVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16409466158Homeobox protein Meis1
4xrs_B2e-16409466158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21861.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9460351e-155AY946035.1 Fragaria x ananassa BEL1-related homeotic protein 30 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004289652.10.0PREDICTED: BEL1-like homeodomain protein 6
TrEMBLA0A2P6PPN20.0A0A2P6PPN2_ROSCH; Putative transcription factor Homobox-WOX family
STRINGXP_004289652.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-123BEL1-like homeodomain 6