PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21829.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 733aa    MW: 79946.3 Da    PI: 4.9501
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21829.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.2e-08561602346
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              +W++++ e++++a+k +G +  + Ia  ++ gRt+ q+k++++k
  mrna21829.1-v1.0-hybrid 561 KWSKQDTEIFYEAIKPFGFD-SSIIALLFP-GRTPRQIKLKLNK 602
                              7*******************.*********.***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.3E-18552632No hitNo description
SMARTSM007176.3E-6558606IPR001005SANT/Myb domain
CDDcd001671.10E-5561604No hitNo description
SuperFamilySSF466891.05E-5562608IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDDLLDFEPT GPVRVAGRFR PKAKSRSTKV TSTAAASNVV TESSIPVSST VSDTIPSATS  60
IDVGEVKVTS LVGSSSEILG SLELSGNEHL CSRVQSFDGD RTTKVSESAA PHSLQPSLMV  120
AAFNGSHLAG KNADIFSGLE CLDDFLTQTT SGTVPASRKS PDKFNGQKCD APTHCSVESS  180
ALACDVAQTQ TISDYCATKG PLSCTEASMS NEHGEIRLET QEFETVDAVS DAPISTGCRT  240
GKFPPKLSVK KGKENPNIPH SGVEQSTVSP AAKFKTGEMD ERSVFVNSSG DVAYHISLTF  300
GDSIAPNPTP YFQENAESLT KLGDAVFGDA TLSKGVCGKG HRSGNEKAYT VSSPPQKRKV  360
SAADEEAKDG TSSRKSRKQL PRRHVEELGN NTYEDSFDAE NCSDCDGNAD RSDHNTEHRK  420
RAPRQSKIPA SENEKTVQKR KRTKKAPDEP TEELTEKKSS HSTLDKSLVE IPEDEIDLQK  480
VPIKDIIRLN DTDTDSLPCY SLPLMQIKEA AKLKTPASNK SANDECHKEA CHNEVGDRDR  540
VSTSSPSLNY HSFMNKERPI KWSKQDTEIF YEAIKPFGFD SSIIALLFPG RTPRQIKLKL  600
NKEKRRNPKR TDEACHCDSK DYSKYDLVIN VARERQELDA DESSDIADQE EVELTHDHNE  660
GMTKPEFDEI HDMETDIAAE VQHKEAAVAE GHSPIISDQN DDVDGFGGWD DDIFQPQSTL  720
PSALINEVVV VA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437444QKRKRTKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21829.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459638.10.0PREDICTED: uncharacterized protein LOC105350014
TrEMBLA0A2P6PPK10.0A0A2P6PPK1_ROSCH; Putative transcription factor MYB/SANT family
STRINGXP_004292009.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-27MYB_related family protein