PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21819.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 720aa    MW: 79722.1 Da    PI: 8.0632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21819.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.96e-12210339190
                     FAR1   1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkk..................................... 47 
                              kfY  YA  vGFs r  k+ k   ++ + + +r ++Csk+g++++  kk                                     
  mrna21819.1-v1.0-hybrid 210 KFYAYYAFVVGFSRRCFKHDKAviNDVECVRRRAWCCSKQGYEDSAAKKkrkkvyetdklvteeaanekeeecedatalnkkkkkk 295
                              6**************9999999766667789999*********999888899**************************98654433 PP

                     FAR1  48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                               +++ r  + +r+gC+a ++v++++ + ++ev +++ +HnHe+a
  mrna21819.1-v1.0-hybrid 296 MKTALRGIKYSRIGCEAVFQVRLNRrTMEYEVVSFVPDHNHEVA 339
                              33333356789*************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-9210339IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.718417455IPR007527Zinc finger, SWIM-type
SMARTSM005756.2E-5430457IPR006564Zinc finger, PMZ-type
PROSITE profilePS501589.059585600IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MATSALLVLG GKGVAAARAG NGMRRAGGVG SPFVNAPLLH PLRTASVVKP PQSSKTRLES  60
ARPIRRRLEG MLPGRGGTHS VFAGACKLKR RDMDDGVEMD ETDESGLRFS NEKYHDIVIS  120
AEDEDCLIED AWKDTLEIME DPVILIEEQE VGRDNSDEHG NSKSVGVDDI TDETIFSSEW  180
YAALKGKNMK LLRFEDVKDI SFSSLAEADK FYAYYAFVVG FSRRCFKHDK AVINDVECVR  240
RRAWCCSKQG YEDSAAKKKR KKVYETDKLV TEEAANEKEE ECEDATALNK KKKKKMKTAL  300
RGIKYSRIGC EAVFQVRLNR RTMEYEVVSF VPDHNHEVAE PYERQFLRSC REVTMDDVRV  360
VLSLQMAQVP TSVAYEFMAL QAGGPEFVGF MLKDLYNKLD EVKKNNVKRG DAESAIDWLR  420
MKGREEDGKY SCSCLQFELD GVPCAHLFCV LKYRNVSVYP KSLIEDRWTK GGGRLKMVPT  480
AAKCVDEKSG RILRYTALMC EAKKACHNLS QSTEGFDTGI VQLSGLTETS TKYREAKRPS  540
VVEPVVHPVP DNVLKDPVIA RTKGMHGNSV PAANAGNVNG GEGNRCRECG VPGHNKRRCP  600
LVKYTNKGPG KCQKSGKKSK TAVSGKSAKP LRSDRSSKPS KSGETGTSEN VGEHGYEENV  660
PATSEFEGNE SNQSKNANTT QRSPSDVVHT DTFVGDECHE NVNMADVNSQ VGKSCQINE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239261RRRAWCCSKQGYEDSAAKKKRKK
2257261KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21819.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2568623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-08FAR1-related sequence 5