PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21800.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 321aa    MW: 34655.2 Da    PI: 4.9626
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21800.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.19.4e-09286309528
                              CHHHCHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaei 28 
                              +r+rr++kNRe+A rsR+RK+ +i
  mrna21800.1-v1.0-hybrid 286 RRQRRMIKNRESAARSRARKQDQI 309
                              69*******************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579593.66E-5286309No hitNo description
CDDcd147073.19E-13286306No hitNo description
Gene3DG3DSA:1.20.5.1702.8E-7286309No hitNo description
PROSITE patternPS000360289304IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVASDEPGGL GYDPNGDGND AKPQPSPSQH QNGESSKQNS IFSLTLDEIQ SKSGKSFGSM  60
NMDEFLANIW SADENQVSSE QPNQGDQENP ANGKDTTSNP ASLSRQGSFS IPTPLCKKTV  120
EEVWSEIDKT RPPPPPDDMS NGEHPQRQST IGEITLEDFL VKAGVVQESH SQNRMESDPI  180
HPQGGDANNS NMASCSSMYG GTSSEMGNNM IGSGYLNPQN AMPNNLSGNE YAIAGYPIFG  240
QAKMIVGNAS FGTNSEIEKC LSLPESSGTK NKKRIIDGPL EVVVERRQRR MIKNRESAAR  300
SRARKQDQII HCLHGISKII *
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21800.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293073.20.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
RefseqXP_011459342.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBLA0A2P6QDK40.0A0A2P6QDK4_ROSCH; Putative transcription factor bZIP family
STRINGXP_004293073.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20923374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.16e-50bZIP family protein