PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21797.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bZIP
Protein Properties Length: 544aa    MW: 60038.1 Da    PI: 7.0096
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21797.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-10238279445
                              XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                               k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  mrna21797.1-v1.0-hybrid 238 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQDL 279
                              6889*************************9777777666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-7235312IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.186237281IPR004827Basic-leucine zipper domain
PfamPF001709.7E-8238280IPR004827Basic-leucine zipper domain
CDDcd147081.04E-20239285No hitNo description
SuperFamilySSF579591.13E-6239281No hitNo description
Gene3DG3DSA:1.20.5.1709.3E-8240282No hitNo description
PROSITE patternPS000360242257IPR004827Basic-leucine zipper domain
PfamPF141446.3E-30320395IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAFISATCPD SSFFLEYKDE NGLLRKSCMA ASHRVVGDTG LSDSGPSSSN HHVPYATVLH  60
GINAPSTSFL NQEGSTFDFG ELEEAIARQV RNEEAQAPLF TGRPAATLEM FPSWPMRYHQ  120
TPRGSSKSAG GESTDSGSQV NTTTLTSKGD QTQVEPESPI SKLASSSNHH HHQHQALDQN  180
HLQFQQQLQQ DMAISDTTRA TTVATGAAEA SKGQSAPKPN HEKRKGAGST SENRQLDAKT  240
LRRLAQNREA ARKSRLRKKA YVQQLESSRI KLTQLEQDLQ RARAQGLLMG GCGGGFGNIS  300
SAAAIFDMEY ARWLEDDHRH MSELRTGLQA HLSDNDLRIV VDGYISHYDE IFQLKGVAAK  360
SDVFHLITGL WASQAERCFL WMGGFRPSDL IKMLTQQLDP ITEQQVMGIC SLQHSSQQAE  420
EALTQGLDQL HQSLIDTIAG GPVIDGMQQM AVALGKLTNL DGFVRQADNL RQQTLHQLRR  480
ILTVRQAARC FLVIGEYYGR LRALSSLWAS RPRESMMSDD NSCQTTTDLQ MVHQPSQNHF  540
SSF*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21797.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7700027e-33KC770002.1 Pyrus pyrifolia microsatellite TXY004 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291604.10.0PREDICTED: transcription factor TGA6 isoform X4
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A2P6QDK20.0A0A2P6QDK2_ROSCH; Putative transcription factor bZIP family
STRINGXP_004291604.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45553357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  2. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]