PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21734.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 266aa    MW: 29874 Da    PI: 6.9512
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21734.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.14.6e-4681383128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               GfrF Pt+eelv++yL +k+e+k+  ++ +vi+++diy++ePwdLp+     +++++++w+fF++r++++a+g r+nr+t+sgyW
  mrna21734.1-v1.0-hybrid   8 TGFRFYPTEEELVSFYLLNKLESKRqGSIRRVIPDLDIYSTEPWDLPRyaaeLCRGDTEQWFFFTPRQQREAQGGRPNRTTASGYW 93 
                              7*********************9995566678***************534543344777*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              katg+   v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+
  mrna21734.1-v1.0-hybrid  94 KATGSPGYVYSSDNRVIGVKKTMVFYKGKAPTGRKTKWKMNEYRA 138
                              *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-495175IPR003441NAC domain
PROSITE profilePS5100547.6666177IPR003441NAC domain
PfamPF023655.6E-248137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDHQEPTTGF RFYPTEEELV SFYLLNKLES KRQGSIRRVI PDLDIYSTEP WDLPRYAAEL  60
CRGDTEQWFF FTPRQQREAQ GGRPNRTTAS GYWKATGSPG YVYSSDNRVI GVKKTMVFYK  120
GKAPTGRKTK WKMNEYRAIE GAAAAPSAAT TRNSPATTTT TNPKLRNEFR LCRVYIVSGS  180
SRAFDRRPLE ASGDTSHRQS DNLLGASTSS SHQATMVAEK TSSSSDTHGS NSGDLADLQA  240
SETTDWEMND DLEQPLWEWE QLNLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-32913718139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21734.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291581.20.0PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR36e-89NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2P6QE701e-139A0A2P6QE70_ROSCH; Putative transcription factor NAM family
STRINGXP_004291581.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-88NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]