PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21677.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 310aa    MW: 34519.1 Da    PI: 6.424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21677.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.8e-15100148153
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                              s ++GVr +k  g+W+AeIr p+++    r +lg++ taeeA +a++ ar k+
  mrna21677.1-v1.0-hybrid 100 SPFRGVRLRK-YGKWAAEIRNPVKG---GRLWLGTYVTAEEASQAYETARSKF 148
                              679******9.7*********7653...7********************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-12101155IPR001471AP2/ERF domain
PROSITE profilePS5103217.517101163IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-13101148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-18102148IPR001471AP2/ERF domain
CDDcd000188.72E-19102161No hitNo description
PRINTSPR003675.8E-7102113IPR001471AP2/ERF domain
PRINTSPR003675.8E-7124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSRPSLNQRN NKSRSCKRRE FDANNMNEDN KVVLTRKVRI MFNDPDATDS SSSSSEQDET  60
MANKKPSKSK RFVRQVLIHM HDSDSGGKWA KTRKRPSSSS PFRGVRLRKY GKWAAEIRNP  120
VKGGRLWLGT YVTAEEASQA YETARSKFDE ILSRAAAAST NNNCSVDNIN NTSSSSSNAN  180
QEDLFLLRKA TDDPIMSSPV SVLDPAMSTD SISVHNVGQL QVSLDSSFQL NEALESLHID  240
HQQQQDVFNF VRHEELNQLI SSIASSSSLE ELGKHLDGTY CSIDDIKIGG CDDHGHYTSL  300
PDCDFDDLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21677.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309841.20.0PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A3Q8TBA40.0A0A3Q8TBA4_FRAAN; Transcription factor ERF48
STRINGXP_004309841.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3386222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-21ERF family protein