PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21677.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34519.1 Da PI: 6.424 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.6 | 8.8e-15 | 100 | 148 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 s ++GVr +k g+W+AeIr p+++ r +lg++ taeeA +a++ ar k+ mrna21677.1-v1.0-hybrid 100 SPFRGVRLRK-YGKWAAEIRNPVKG---GRLWLGTYVTAEEASQAYETARSKF 148 679******9.7*********7653...7********************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-12 | 101 | 155 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.517 | 101 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-13 | 101 | 148 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-18 | 102 | 148 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.72E-19 | 102 | 161 | No hit | No description |
PRINTS | PR00367 | 5.8E-7 | 102 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-7 | 124 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MSRPSLNQRN NKSRSCKRRE FDANNMNEDN KVVLTRKVRI MFNDPDATDS SSSSSEQDET 60 MANKKPSKSK RFVRQVLIHM HDSDSGGKWA KTRKRPSSSS PFRGVRLRKY GKWAAEIRNP 120 VKGGRLWLGT YVTAEEASQA YETARSKFDE ILSRAAAAST NNNCSVDNIN NTSSSSSNAN 180 QEDLFLLRKA TDDPIMSSPV SVLDPAMSTD SISVHNVGQL QVSLDSSFQL NEALESLHID 240 HQQQQDVFNF VRHEELNQLI SSIASSSSLE ELGKHLDGTY CSIDDIKIGG CDDHGHYTSL 300 PDCDFDDLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21677.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309841.2 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF1-like | ||||
TrEMBL | A0A3Q8TBA4 | 0.0 | A0A3Q8TBA4_FRAAN; Transcription factor ERF48 | ||||
STRING | XP_004309841.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF33862 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-21 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21677.1-v1.0-hybrid |