PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21669.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 234aa MW: 26291.7 Da PI: 9.0423 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 90.5 | 2.2e-28 | 69 | 156 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H mrna21669.1-v1.0-hybrid 69 FYNAYATHVGFIIRVSKLSRSRRDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTH 152 ******************************************9988..9************************************* PP FAR1 88 elap 91 +l+p mrna21669.1-v1.0-hybrid 153 PLTP 156 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-25 | 69 | 156 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEGSRAGDDN ETGGSSVEGA FQLGQDDKLI LDSSGRNLIP SAIPVVSVVS ADEPYVGQEF 60 ETEAAAHAFY NAYATHVGFI IRVSKLSRSR RDGTAIGRAL VCNKEGYRMP DKREKIVRQR 120 AETRVGCRAM ILVRKVSSGK WVVTKFVKEH THPLTPGKGR RDCIYDQYPN EHDKIRELSQ 180 QLAVEKKRAA TYKRHLDLIF EHIEEHNESL SKKIQHIVDS VKEIEGKEQQ GYR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21669.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309808.1 | 1e-173 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_011457258.1 | 1e-173 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_011457259.1 | 1e-173 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 | ||||
Refseq | XP_011457260.1 | 1e-173 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Refseq | XP_011457261.1 | 1e-174 | PREDICTED: protein FAR1-RELATED SEQUENCE 1 isoform X3 | ||||
TrEMBL | A0A2P6QUD0 | 1e-165 | A0A2P6QUD0_ROSCH; Putative transcription factor FAR family | ||||
STRING | XP_004309808.1 | 1e-173 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-94 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21669.1-v1.0-hybrid |