PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21668.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 801aa    MW: 90729.7 Da    PI: 7.5269
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21668.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.95.5e-26139227290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              fY++YA+++GF +r+ + ++s+r+g+i  r++ C+keg+  + + k   +r++ra+tr gCka+++vk +k+gkw++tk+++eHnH
  mrna21668.1-v1.0-hybrid 139 FYDDYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPNRKPRASTREGCKAMIHVKYDKSGKWVITKFVKEHNH 224
                              9**************************************99999999*************************************** PP

                     FAR1  88 ela 90 
                              +l+
  mrna21668.1-v1.0-hybrid 225 SLV 227
                              996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-23139227IPR004330FAR1 DNA binding domain
SuperFamilySSF813831.94E-7375439IPR001810F-box domain
Gene3DG3DSA:1.20.1280.504.7E-5379433No hitNo description
SuperFamilySSF1606314.19E-5458566No hitNo description
Gene3DG3DSA:2.60.40.14702.6E-35659799IPR007474ApaG domain
PROSITE profilePS5108728.111659800IPR007474ApaG domain
SuperFamilySSF1100691.26E-28661800IPR007474ApaG domain
PfamPF043793.0E-24681772IPR007474ApaG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019005Cellular ComponentSCF ubiquitin ligase complex
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MSQVPTFCVE FLSFATVRRR RGRVSTPVDF SSFPDHFPSL ASPPNSSFPA RSSKTSNKIN  60
LTEKLEFDGL AGNEKWSGKL LKSAGVEFDL ETFTPLCCLG FPRLLVALLN QEPIAYQEEA  120
ILEPYQGMEF ESEDAAKIFY DDYARRLGFV MRVMSCRRSE RDGRILARRL GCNKEGHCVS  180
IRGKFGPNRK PRASTREGCK AMIHVKYDKS GKWVITKFVK EHNHSLVVSP REARQTMDEK  240
DKKIQELSAE LRNKKRLCTT YQEQLTAFMK IVEEYNDQLS LKDFSPSVLT GNESENPEKL  300
VTYLHNFQLF SLVYDHSKDR NVTTLWLLIG FTPSYFAIEM RILPLVAEVD SFEAARCERE  360
QREREMGLEA VGDLALHIIL RKLGAEESAR AACVSKQLRA SASEDPLWSH FCAQDLHLHQ  420
PLDPHGNLAP SFKASYGLWR ESFSMYPWSL VKRAKRCWAK ITNWLSLHFP EAHSSLNKGA  480
SEADIQHLET QLKVKLPLPT RILYRFHDGQ DLHDSLLGLI GGYSFYNHLV NVSLLPLHQI  540
VLETKHVMPK LGFSATPDYI VVASSSSTYS QKLFFLNCTT GQLYVGTANL LPDAEMLPCV  600
PNALLNSVHD HNGDQQQDGM LLWLEEHYRR LENGIIRLRE QEAMRSISQF PEESPLCSTA  660
VTNGVQVRCS SVFVPEFSNL QDNTQRYYFS YSIRMSLLPE GCGINGMTFN SCQLLSRHWV  720
IRAYDVVVAN VNGEAVIGKY PLLCPGEQEF VYESCTPLPS SSGSIEGSFM FVPGRLADPK  780
GSRFRVPAAR FPLQLPDYIF *
Functional Description ? help Back to Top
Source Description
UniProtComponent of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21668.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309806.10.0PREDICTED: F-box protein SKIP16 isoform X1
SwissprotQ9LND70.0SKI16_ARATH; F-box protein SKIP16
TrEMBLA0A2P6QUC40.0A0A2P6QUC4_ROSCH; Putative F-box domain, ApaG domain-containing protein
STRINGXP_004309806.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.16e-92FAR1 family protein
Publications ? help Back to Top
  1. Gagne JM,Downes BP,Shiu SH,Durski AM,Vierstra RD
    The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(17): p. 11519-24
    [PMID:12169662]
  2. Risseeuw EP, et al.
    Protein interaction analysis of SCF ubiquitin E3 ligase subunits from Arabidopsis.
    Plant J., 2003. 34(6): p. 753-67
    [PMID:12795696]