PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21668.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 801aa MW: 90729.7 Da PI: 7.5269 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.9 | 5.5e-26 | 139 | 227 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fY++YA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k +r++ra+tr gCka+++vk +k+gkw++tk+++eHnH mrna21668.1-v1.0-hybrid 139 FYDDYARRLGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPNRKPRASTREGCKAMIHVKYDKSGKWVITKFVKEHNH 224 9**************************************99999999*************************************** PP FAR1 88 ela 90 +l+ mrna21668.1-v1.0-hybrid 225 SLV 227 996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-23 | 139 | 227 | IPR004330 | FAR1 DNA binding domain |
SuperFamily | SSF81383 | 1.94E-7 | 375 | 439 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 4.7E-5 | 379 | 433 | No hit | No description |
SuperFamily | SSF160631 | 4.19E-5 | 458 | 566 | No hit | No description |
Gene3D | G3DSA:2.60.40.1470 | 2.6E-35 | 659 | 799 | IPR007474 | ApaG domain |
PROSITE profile | PS51087 | 28.111 | 659 | 800 | IPR007474 | ApaG domain |
SuperFamily | SSF110069 | 1.26E-28 | 661 | 800 | IPR007474 | ApaG domain |
Pfam | PF04379 | 3.0E-24 | 681 | 772 | IPR007474 | ApaG domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0019005 | Cellular Component | SCF ubiquitin ligase complex | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MSQVPTFCVE FLSFATVRRR RGRVSTPVDF SSFPDHFPSL ASPPNSSFPA RSSKTSNKIN 60 LTEKLEFDGL AGNEKWSGKL LKSAGVEFDL ETFTPLCCLG FPRLLVALLN QEPIAYQEEA 120 ILEPYQGMEF ESEDAAKIFY DDYARRLGFV MRVMSCRRSE RDGRILARRL GCNKEGHCVS 180 IRGKFGPNRK PRASTREGCK AMIHVKYDKS GKWVITKFVK EHNHSLVVSP REARQTMDEK 240 DKKIQELSAE LRNKKRLCTT YQEQLTAFMK IVEEYNDQLS LKDFSPSVLT GNESENPEKL 300 VTYLHNFQLF SLVYDHSKDR NVTTLWLLIG FTPSYFAIEM RILPLVAEVD SFEAARCERE 360 QREREMGLEA VGDLALHIIL RKLGAEESAR AACVSKQLRA SASEDPLWSH FCAQDLHLHQ 420 PLDPHGNLAP SFKASYGLWR ESFSMYPWSL VKRAKRCWAK ITNWLSLHFP EAHSSLNKGA 480 SEADIQHLET QLKVKLPLPT RILYRFHDGQ DLHDSLLGLI GGYSFYNHLV NVSLLPLHQI 540 VLETKHVMPK LGFSATPDYI VVASSSSTYS QKLFFLNCTT GQLYVGTANL LPDAEMLPCV 600 PNALLNSVHD HNGDQQQDGM LLWLEEHYRR LENGIIRLRE QEAMRSISQF PEESPLCSTA 660 VTNGVQVRCS SVFVPEFSNL QDNTQRYYFS YSIRMSLLPE GCGINGMTFN SCQLLSRHWV 720 IRAYDVVVAN VNGEAVIGKY PLLCPGEQEF VYESCTPLPS SSGSIEGSFM FVPGRLADPK 780 GSRFRVPAAR FPLQLPDYIF * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21668.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004309806.1 | 0.0 | PREDICTED: F-box protein SKIP16 isoform X1 | ||||
Swissprot | Q9LND7 | 0.0 | SKI16_ARATH; F-box protein SKIP16 | ||||
TrEMBL | A0A2P6QUC4 | 0.0 | A0A2P6QUC4_ROSCH; Putative F-box domain, ApaG domain-containing protein | ||||
STRING | XP_004309806.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 6e-92 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21668.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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