PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21665.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family DBB
Protein Properties Length: 348aa    MW: 38233.1 Da    PI: 4.6062
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21665.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.7e-07113152538
                 zf-B_box   5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                               C+ +e+ +++  C  ++  lC++C +e H        H+
  mrna21665.1-v1.0-hybrid 113 QCDVCEKAPATVICCADEAALCAKCDVEVHAAnklaskHQ 152
                              7*****************************6556666665 PP
2zf-B_box31.73.2e-10162203237
                 zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                              + ++C+ +++k + +fC +++ l+C+dC +++H+g      H
  mrna21665.1-v1.0-hybrid 162 KLPRCDICQDKAAFIFCVEDRALFCQDCDESIHSGntlsayH 203
                              789******************************886666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.2109156IPR000315B-box-type zinc finger
SMARTSM003366.9E-11109156IPR000315B-box-type zinc finger
CDDcd000212.25E-6112154No hitNo description
PfamPF006434.1E-5113153IPR000315B-box-type zinc finger
PROSITE profilePS501199.03161208IPR000315B-box-type zinc finger
SMARTSM003363.5E-13161208IPR000315B-box-type zinc finger
PfamPF006435.6E-8162196IPR000315B-box-type zinc finger
CDDcd000211.71E-8164207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSIKASCESS FTMMFQVEVV FPVELTEPSP KVKGYDPEMN EDGLNLDQDL LEERQHATRS  60
HASEISRKTK GSPSSITNVC ALGTQIVGLG DQANPNPYHH PHPQLLPVAM KIQCDVCEKA  120
PATVICCADE AALCAKCDVE VHAANKLASK HQRLVLESLS NKLPRCDICQ DKAAFIFCVE  180
DRALFCQDCD ESIHSGNTLS AYHQRFLATG IRVALSSACN NKDAQTCSLD PPNQTTSHLV  240
STKLPNSLFS PPWAVDDLLQ LSDFESSDKK ESLEFGELEW MADMGLFGEQ FPQEALAAAE  300
VPQLPVSQSS NYTSYRPPKS NSPYKKPRIE IPDDDDEHFT VPDLGIF*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21665.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309809.11e-176PREDICTED: B-box zinc finger protein 24
SwissprotQ962882e-97BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A2P6QUB71e-150A0A2P6QUB7_ROSCH; Putative transcription factor interactor and regulator Znf-B family
STRINGXP_004309809.11e-175(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-100DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]