PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21592.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 541aa    MW: 60609.7 Da    PI: 6.8152
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21592.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS455.82.7e-1391655342374
                     GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               ++L+ cA+av+++dl +aq+++ +l++++s +g+p+qRl ay++e+L ar a+s+s+++kal+++e +   sse l+++++++ev
  mrna21592.1-v1.0-hybrid 165 NQVLIFCAKAVADNDLLMAQWMMDELRQMVSVSGEPIQRLGAYMLEGLVARRASSGSSICKALRCKEPA---SSELLSYMHILYEV 247
                              689*****************************************************************9...9************* PP

                     GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                              +P++kf+++ aN aI ea++ e++vHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +g+rL+k+Ae 
  mrna21592.1-v1.0-hybrid 248 CPYFKFGYMSANGAIAEAMKDEDKVHIIDFQIGQGSQWLTLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLNIVGKRLSKLAEM 333
                              **************************************************************998899999*************** PP

                     GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                              ++vpfef++ +a +  d++le+L v+pgEala n++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rf
  mrna21592.1-v1.0-hybrid 334 FKVPFEFHA-AAISGCDVQLENLGVRPGEALAMNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRF 418
                              *********.88999*********************************************************************** PP

                     GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                              +e+l+yy+a+f+s++++lpr+++eri+vE+++l++e+vn++aceg er+erhe l+kWr+r+ +aGF+p+pls+ +++++k+ll++
  mrna21592.1-v1.0-hybrid 419 VETLNYYTAMFESIDVTLPRDHKERINVEQHCLAKEVVNIIACEGIERVERHELLGKWRSRFAMAGFTPYPLSSLVNATIKTLLKN 504
                              ************************************************************************************** PP

                     GRAS 344 vksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +++  yr++e++g+l+lgWk+r Lv+ +aW+
  mrna21592.1-v1.0-hybrid 505 YSD-KYRLQERDGALYLGWKNRDLVASCAWK 534
                              **5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.727138515IPR005202Transcription factor GRAS
PfamPF035149.3E-137165534IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MSKRLHYQPK QEVEAYCLPP FRILDHQPAY NESSQSTHST AQSFHERYCT LESSSTNGSY  60
NTLYTSSSTV SFSPSGSPMS QHEQDSHYQH HSPDHMYGSP ISGSCITDDA TDFKYKLKEL  120
ETAMLGDSNI FDNYCSSLQN GARNTRPEVD SWGQIMDSIS KKDLNQVLIF CAKAVADNDL  180
LMAQWMMDEL RQMVSVSGEP IQRLGAYMLE GLVARRASSG SSICKALRCK EPASSELLSY  240
MHILYEVCPY FKFGYMSANG AIAEAMKDED KVHIIDFQIG QGSQWLTLIQ AFAARPGGPP  300
HIRITGIDDS TSAYARGGGL NIVGKRLSKL AEMFKVPFEF HAAAISGCDV QLENLGVRPG  360
EALAMNFAFM LHHMPDESVS TQNHRDRLLR LVKSLSPKVV TLVEQESNTN TAAFFPRFVE  420
TLNYYTAMFE SIDVTLPRDH KERINVEQHC LAKEVVNIIA CEGIERVERH ELLGKWRSRF  480
AMAGFTPYPL SSLVNATIKT LLKNYSDKYR LQERDGALYL GWKNRDLVAS CAWKCKPGTN  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-621665346375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21592.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293455.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2P6S1K40.0A0A2P6S1K4_ROSCH; Putative transcription factor GRAS family
STRINGXP_004293455.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]