PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21591.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 506aa    MW: 55373.5 Da    PI: 6.8695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21591.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29146203260
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                              +DgynWrKYGqK v+g+ + rsYYrCt+++Cpvk++vers+ ++++++++Y g+H+h+k
  mrna21591.1-v1.0-hybrid 146 EDGYNWRKYGQKLVRGNIYVRSYYRCTHPKCPVKRQVERSQ-NGQITDTVYFGQHDHPK 203
                              8****************************************.***************85 PP
2WRKY1031.7e-32314372159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+ +d kvv+ tYeg+H+h+
  mrna21591.1-v1.0-hybrid 314 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERAINDSKVVIATYEGQHDHD 372
                              58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26136204IPR003657WRKY domain
PROSITE profilePS5081122.159140204IPR003657WRKY domain
SuperFamilySSF1182902.88E-24141204IPR003657WRKY domain
SMARTSM007741.4E-32145203IPR003657WRKY domain
PfamPF031067.2E-23146202IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-34304374IPR003657WRKY domain
SuperFamilySSF1182904.32E-29306374IPR003657WRKY domain
PROSITE profilePS5081135.117309374IPR003657WRKY domain
SMARTSM007743.7E-37314373IPR003657WRKY domain
PfamPF031061.2E-25315371IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MVSPQKDVTD EVASDNTPKK ENDVKDEVAS DNTPKKESDV KDEVASDNTP KKENIDTAIH  60
GSPHQTPTNG VCPLKLDDKG SAFSKIPNTA LQAPDGGITA LQSNQEGSVS SLTSEKALLT  120
PETGSVVLQH GHEGTTSSRV REKPLEDGYN WRKYGQKLVR GNIYVRSYYR CTHPKCPVKR  180
QVERSQNGQI TDTVYFGQHD HPKPQLNVPI AVGFAVSVGE EKAEQRLLTS VEDKPLEAHG  240
NSPNKTEPVD LLQLSNIAEN EAVQGVLSLS NRTRDGDPDP KRQKKEKHYG NSTPVDKPTG  300
ELRVVQTMSE VDIVNDGYRW RKYGQKLVKG NPNPRSYYRC SNPGCPVKKH VERAINDSKV  360
VIATYEGQHD HDVPPSRTVT FNGTASNVLP AVHIGDSGTK IEGHAISHVA STSPKHESKP  420
IEQPDSESRT KSRRIDAAAS EMVDDTDMGP ERKLNEQLIG KACVQEEGDP PETIVCRAIK  480
LQNGESGSIP SKQEIRKPKT EPVHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-34145375475WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21591.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293454.10.0PREDICTED: WRKY transcription factor 1 isoform X1
SwissprotQ9SI371e-81WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A2P6S1I70.0A0A2P6S1I7_ROSCH; Putative transcription factor WRKY family
STRINGXP_004293454.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93583343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.25e-85zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]