PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21527.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 264aa MW: 29442.9 Da PI: 6.7282

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21527.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.2	6e-28	96	184	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 fYn+YA +vGF++r++ ++s+ +g+++ rt+vC+keg+r +k++ +k+ r+ra tr+gCka++ +kk ++g+w+v+k+++eH H mrna21527.1-v1.0-hybrid 96 FYNAYALRVGFRTRVNDLSRSRVDGSVIARTLVCNKEGYRVADKRD-RKSVRPRAPTRVGCKAMISMKKLSNGNWVVAKFVKEHAH 180 ****************************************9999.99*********************************** PP FAR1 88 elap 91 +l+p mrna21527.1-v1.0-hybrid 181 SLTP 184 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-25	96	184	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MDKQFHHPFP GAGYIDFGDV LDSGIDTETQ NGASDRSADV ELRLKNDDAI LGTSVEEVST 60 IGQIEQVDHN SASMEVEADE PYVGQEFESE AAAHAFYNAY ALRVGFRTRV NDLSRSRVDG 120 SVIARTLVCN KEGYRVADKR DRKSVRPRAP TRVGCKAMIS MKKLSNGNWV VAKFVKEHAH 180 SLTPGRSENG LNDESSDEQM KIKELTQQLM VERKRSASYR KIIDLLLNHI DDHTQLLSQK 240 ILRVNDILKD IASSEGKGRQ NPR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21527.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011466083.1	1e-179	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251P0W7	1e-127	A0A251P0W7_PRUPE; Uncharacterized protein
TrEMBL	M5VZA8	1e-126	M5VZA8_PRUPE; Uncharacterized protein
STRING	XP_008218478.1	1e-128	(Prunus mume)
STRING	EMJ06789	1e-127	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	3e-58	FAR1 family protein

Link Out ? help Back to Top
Phytozome	mrna21527.1-v1.0-hybrid