PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21524.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 723aa    MW: 78887.7 Da    PI: 6.7827
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21524.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10215271155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  mrna21524.1-v1.0-hybrid 215 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 271
                              57*******************4444.2455535555.7799999*************98 PP
2AP246.68.3e-15314365155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  mrna21524.1-v1.0-hybrid 314 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 365
                              57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-14215281IPR016177DNA-binding domain
PfamPF008473.7E-8215271IPR001471AP2/ERF domain
CDDcd000181.04E-18215281No hitNo description
Gene3DG3DSA:3.30.730.103.7E-11216280IPR001471AP2/ERF domain
PROSITE profilePS5103217.016216279IPR001471AP2/ERF domain
SMARTSM003805.3E-22216285IPR001471AP2/ERF domain
PRINTSPR003673.9E-6217228IPR001471AP2/ERF domain
PfamPF008471.0E-9314365IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17314375IPR016177DNA-binding domain
CDDcd000186.47E-25314375No hitNo description
PROSITE profilePS5103219.045315373IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18315374IPR001471AP2/ERF domain
SMARTSM003801.5E-33315379IPR001471AP2/ERF domain
PRINTSPR003673.9E-6355375IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MKGAGMNSSD SNNYKRTSSS DLSTMLMGSS TTTSTSCINS QTNLEDHHQQ LPKLENFLGR  60
HSFADHDHSS SGHDYMFDMN NGPGPVSNVT NTNSNNLGLS MIKTWLRNQP SQPHDNHHQL  120
EQEKKNSKES RNQPQSSLSL SMSTGSLHTI TTATAGGAAS AATGETTCSS DNTTKQSPVV  180
TATTTTGTDA QTQSTGGAIE AVPRKAIETF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR  240
EGQTRKGRQG GYDKEDKAAR AYDLAALKYW GTTTTTNFPI SSYEKEIDEM KPMTRQEYVA  300
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA  360
IKFRGLNAVT NFDMSRYDVK SILESSALPI TSGATAKRLK EQQQQPPPAD HHHQIMLSSV  420
LDHQGQMIRS SSSTEHDIMS NVYSAYGSYG AQQGCSWPTL AFNQPQAQAA AAAPPHQAPY  480
AAGISGMQLH YSPYGYGYGN AHAQRVWCKQ EQDTNSNQEN SFHHPDDDHL RQQLQLGGTH  540
NFFHDHDQQP SCLMGLMDSS SAASMEHSSG SNSVIYSAGD HHGINNGYGS STTGTGSGYI  600
MPMAMSTVVA NEDQNQGDGN NDNMNGTGFG DGDDHDANIK AQQLGYDHQN MFHGSSSTTD  660
PSYQHHASNR NLYYHLPAHD DQHESSSVAV ATSSTTATCN MNWVPTAVPT VTHPTFTVWN  720
DA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21524.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4296740.0KC429674.1 Rosa canina BBM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466082.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT1
SwissprotQ8LSN21e-134BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A3Q8TDK90.0A0A3Q8TDK9_FRAAN; Transcription factor AP27
STRINGXP_004304826.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-119AP2 family protein