PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21486.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YC
Protein Properties Length: 287aa    MW: 31670.2 Da    PI: 5.1805
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21486.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC59.66.5e-196861898
                    NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                             ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl +iv r
  mrna21486.1-v1.0-hybrid  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSVHLKHCVQSYNVFDFLREIVSR 86
                             5789*************************************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.1E-26372IPR009072Histone-fold
SuperFamilySSF471132.55E-20489IPR009072Histone-fold
PfamPF008083.3E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSVHLKHC VQSYNVFDFL REIVSRVPDY GHGHSDAAAS ADDRAITKRR KPPGDECIDS  120
DEELKRSKML EVSHGSSSGR GRGRGRGRGR GRGARTTERE PVHHETESEP CTSLQQSSKL  180
NVNPAMVVDD VSESKDLLKE NVGVPDESDP TVRNFDLNAD VHEKEDTKAA AAAAQASSAA  240
PTSETKHEEY PGWSLSDVDK MAIDPLQLAQ LSKRLDEDEE DYDEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A3e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141151RGRGRGRGRGR
2143152RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21486.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307213.10.0PREDICTED: dr1-associated corepressor
TrEMBLA0A2P6SAU01e-164A0A2P6SAU0_ROSCH; Putative transcription factor Hap3/NF-YB family
STRINGXP_004307213.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-78nuclear factor Y, subunit C11