PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21486.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 287aa MW: 31670.2 Da PI: 5.1805 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 59.6 | 6.5e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl +iv r mrna21486.1-v1.0-hybrid 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSVHLKHCVQSYNVFDFLREIVSR 86 5789*************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-26 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.55E-20 | 4 | 89 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.3E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSVHLKHC VQSYNVFDFL REIVSRVPDY GHGHSDAAAS ADDRAITKRR KPPGDECIDS 120 DEELKRSKML EVSHGSSSGR GRGRGRGRGR GRGARTTERE PVHHETESEP CTSLQQSSKL 180 NVNPAMVVDD VSESKDLLKE NVGVPDESDP TVRNFDLNAD VHEKEDTKAA AAAAQASSAA 240 PTSETKHEEY PGWSLSDVDK MAIDPLQLAQ LSKRLDEDEE DYDEEG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 3e-23 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 151 | RGRGRGRGRGR |
2 | 143 | 152 | RGRGRGRGRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21486.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307213.1 | 0.0 | PREDICTED: dr1-associated corepressor | ||||
TrEMBL | A0A2P6SAU0 | 1e-164 | A0A2P6SAU0_ROSCH; Putative transcription factor Hap3/NF-YB family | ||||
STRING | XP_004307213.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1728 | 34 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 5e-78 | nuclear factor Y, subunit C11 |
Link Out ? help Back to Top | |
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Phytozome | mrna21486.1-v1.0-hybrid |