PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21477.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17611.2 Da PI: 8.4652 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.5 | 1.1e-10 | 14 | 44 | 15 | 45 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgk 45 R + KKA+ELS+LC+++v++i f ++++ mrna21477.1-v1.0-hybrid 14 DRERNLCKKANELSILCGTDVCMITFKPHNT 44 5888899******************987664 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 3.53E-10 | 8 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.349 | 8 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-10 | 15 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MDKVPSFRRK LLRDRERNLC KKANELSILC GTDVCMITFK PHNTKPETWP QERTELQKSI 60 ALSKSTRLDP KKMKLDLSFS DSYDSETRGK KLHADYNALN PEEAMAMEMQ YQEGTAKHPQ 120 NELIGDDEAK LASLEVKLQA ITKRIASMEA NYF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21477.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470562.1 | 1e-112 | PREDICTED: uncharacterized protein LOC105353257 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF32548 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 1e-10 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21477.1-v1.0-hybrid |