PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21463.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 340aa    MW: 38933.3 Da    PI: 4.9117
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21463.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48e-16237327498
                              E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                              v++ps+v  s+ + +p++f  +h ++k  +s  + l+  + +sW++++    + +++ l++GW eFv++n+LkegD++vF l+++ 
  mrna21463.1-v1.0-hybrid 237 VMSPSYVKGSC-VHFPREFSYRHlKMK--CS-HINLRV-NKKSWSLNIYQGIRNKSFKLQAGWPEFVRENNLKEGDVCVFVLNETI 317
                              78999999999.*******99994433..43.677655.77*******44555556*************************98765 PP

                              EE..EEEEE- CS
                       B3  89 efelvvkvfr 98 
                              +  + v++fr
  mrna21463.1-v1.0-hybrid 318 RYVFDVTIFR 327
                              5555666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-4457IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19227328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-17232328IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-17232327No hitNo description
PROSITE profilePS5086312.52233329IPR003340B3 DNA binding domain
SMARTSM010191.6E-7234329IPR003340B3 DNA binding domain
PfamPF023623.3E-13236316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MATGRQPSFF KVLKGDDFCE KLKIPRAFLM HFDGTVPEQC QLRIRTQTWL VDVERVHRNG  60
NSEFYVHIYG IDACKREFAE VAREVSDSAK WNYVSRIEEA DSDDASVQAG DDDDDKEEDD  120
DEDDDFENEA DSEDKDEYVE EEVESDRDEG KSDDSIDILD EFPQCSKVET KRTSSGLHKR  180
KINCSQAKAQ SIKRRASGWS SNQRIKALKQ NGTGELIARH RAADFMSKSV DPSCLIVMSP  240
SYVKGSCVHF PREFSYRHLK MKCSHINLRV NKKSWSLNIY QGIRNKSFKL QAGWPEFVRE  300
NNLKEGDVCV FVLNETIRYV FDVTIFRTTE AADCTLPGE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21463.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470561.10.0PREDICTED: B3 domain-containing protein REM19-like
TrEMBLA0A2P6RMW95e-72A0A2P6RMW9_ROSCH; Putative transcription factor B3-Domain family
STRINGXP_004308669.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3465122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-15related to vernalization1 1