PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21454.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 176aa MW: 18747.6 Da PI: 4.3664 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 63.3 | 9.4e-20 | 21 | 107 | 4 | 97 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaessss 80 +k ++s h k +g +Rl+ +c ar+ +L+deLGfd +++t+eWLl+ +p+i ++tg + ++ mrna21454.1-v1.0-hybrid 21 GKASTSVGHGKDEGGECGIRLPKKCVARLVQLTDELGFDDNGQTVEWLLNTVEPSIVAATGRsvssintpsT---------QAPAP 97 688888899999999999********************************************5554433321.........11111 PP TCP 81 sasnsssgkaaksaaks 97 s++ a++++++ mrna21454.1-v1.0-hybrid 98 STQ-------ATEDMEE 107 111.......1111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 11.113 | 25 | 79 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.3E-15 | 39 | 117 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MGTVPNFSTK ASSSSNQLFH GKASTSVGHG KDEGGECGIR LPKKCVARLV QLTDELGFDD 60 NGQTVEWLLN TVEPSIVAAT GRSVSSINTP STQAPAPSTQ ATEDMEENAT VSLEDKDLVK 120 KKRANAGQPL PLPYDDFMRL VTNYDLEFSA NDVAVDVGIP AHEENNNQDG QERLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21454.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459879.1 | 1e-128 | PREDICTED: transcription factor TCP9-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF34235 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-16 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21454.1-v1.0-hybrid |