PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21454.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family TCP
Protein Properties Length: 176aa    MW: 18747.6 Da    PI: 4.3664
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21454.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP63.39.4e-2021107497
                      TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaessss 80 
                              +k ++s  h k +g    +Rl+ +c ar+ +L+deLGfd +++t+eWLl+  +p+i ++tg          +         ++   
  mrna21454.1-v1.0-hybrid  21 GKASTSVGHGKDEGGECGIRLPKKCVARLVQLTDELGFDDNGQTVEWLLNTVEPSIVAATGRsvssintpsT---------QAPAP 97 
                              688888899999999999********************************************5554433321.........11111 PP

                      TCP  81 sasnsssgkaaksaaks 97 
                              s++       a++++++
  mrna21454.1-v1.0-hybrid  98 STQ-------ATEDMEE 107
                              111.......1111111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136911.1132579IPR017887Transcription factor TCP subgroup
PfamPF036343.3E-1539117IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGTVPNFSTK ASSSSNQLFH GKASTSVGHG KDEGGECGIR LPKKCVARLV QLTDELGFDD  60
NGQTVEWLLN TVEPSIVAAT GRSVSSINTP STQAPAPSTQ ATEDMEENAT VSLEDKDLVK  120
KKRANAGQPL PLPYDDFMRL VTNYDLEFSA NDVAVDVGIP AHEENNNQDG QERLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21454.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011459879.11e-128PREDICTED: transcription factor TCP9-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3423522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-16TCP family protein