PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21453.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | TCP | ||||||||
Protein Properties | Length: 160aa MW: 17553.6 Da PI: 8.2335 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 85.9 | 9.9e-27 | 17 | 101 | 4 | 88 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 +k ++ + Tkv+g + R Rl+ +caa +F+ ++eLG+++d++tieWLl+qa+p+i tg+s ++++ +++ s+++++ + + mrna21453.1-v1.0-hybrid 17 GKASSEDNNTKVDGHGHRTRLPPTCAAWIFQFTRELGHKTDGQTIEWLLKQAEPSILVVTGNSVTPSNTSSTLVSVNMQAGNVVS 101 789999********************************************************99999777444444444322222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-20 | 20 | 106 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 16.851 | 21 | 75 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MGTNPWNASR SRNKVLGKAS SEDNNTKVDG HGHRTRLPPT CAAWIFQFTR ELGHKTDGQT 60 IEWLLKQAEP SILVVTGNSV TPSNTSSTLV SVNMQAGNVV SEDKNSLRKK CTKGGGQPMP 120 PPYDHYLKII TKNYSIEFSV NDVAIDVGIE AQREDERQD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21453.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011459878.1 | 1e-117 | PREDICTED: transcription factor TCP8-like | ||||
TrEMBL | W1PHC6 | 1e-25 | W1PHC6_AMBTC; Uncharacterized protein | ||||
STRING | ERN09397 | 2e-26 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-28 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21453.1-v1.0-hybrid |