PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21370.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 1983aa MW: 225528 Da PI: 6.969 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.2 | 1e-15 | 714 | 770 | 6 | 59 |
-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 6 nWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +W KYG K+ ++ +pr+Y+rC ++ gC++ k+++ + pk++++tY g+H+++ mrna21370.1-v1.0-hybrid 714 AWIKYGDKKLLDAAYPRAYFRCIHQldqGCQAGKQIQIVQYTPKMFQTTYYGNHTCR 770 7***********************9999**************************996 PP | |||||||
2 | WRKY | 73.9 | 2.1e-23 | 1716 | 1776 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg WrKYGqK++ g+ +pr+Y+rCt + gC+++k+v++ +++pk+ e+tY g+H+++ mrna21370.1-v1.0-hybrid 1716 DDGLPWRKYGQKDILGASYPRAYFRCTRKydqGCQATKQVQQIQDNPKMYETTYIGQHTCK 1776 8**************************998899**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52200 | 3.14E-39 | 8 | 156 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Gene3D | G3DSA:3.40.50.10140 | 1.1E-22 | 13 | 129 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
PROSITE profile | PS50104 | 26.658 | 13 | 153 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SMART | SM00255 | 5.8E-43 | 14 | 153 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 2.7E-46 | 14 | 186 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Gene3D | G3DSA:3.80.10.10 | 9.4E-21 | 192 | 425 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52047 | 5.96E-22 | 195 | 424 | No hit | No description |
SMART | SM00369 | 8.9 | 342 | 365 | IPR003591 | Leucine-rich repeat, typical subtype |
Gene3D | G3DSA:2.20.25.80 | 1.2E-15 | 702 | 770 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-16 | 702 | 770 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.49 | 704 | 767 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-17 | 709 | 771 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-15 | 713 | 770 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.6E-4 | 790 | 833 | IPR003657 | WRKY domain |
SuperFamily | SSF52200 | 1.05E-40 | 1007 | 1155 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Gene3D | G3DSA:3.40.50.10140 | 7.6E-23 | 1012 | 1129 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
PROSITE profile | PS50104 | 27.056 | 1012 | 1152 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SMART | SM00255 | 1.1E-43 | 1013 | 1152 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
Pfam | PF01582 | 3.0E-49 | 1013 | 1186 | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain |
SuperFamily | SSF52058 | 9.35E-26 | 1188 | 1498 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 4.2E-20 | 1195 | 1434 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00369 | 7.2 | 1371 | 1394 | IPR003591 | Leucine-rich repeat, typical subtype |
Gene3D | G3DSA:2.20.25.80 | 8.3E-24 | 1708 | 1776 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.357 | 1710 | 1773 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.02E-22 | 1710 | 1776 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-35 | 1715 | 1777 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.3E-23 | 1716 | 1776 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007165 | Biological Process | signal transduction | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1983 aa Download sequence Send to blast |
MAASSSLSSG GRWNYDVFLS FRGQDTRKIF VGHLHKALDL KAINAFIDSE DLCKGNDLSE 60 LLRAIEDSRL SVIVFSQDYA SSTWCLKELV KILECAATKK RLVVPIFYEV EPSDIRKLKG 120 SFAEAFVKHE QDSNVDMEEV NRWKIALTEA SNLSGWDSRN YKDDAKFIDK IVEDISEKLV 180 HISSNKATDA VECIMLDLSK SKDIYIDAEA FVKMTRLRLL RIGHNHSIDF NVRDIQSEQL 240 HHPRDLTLSG CLKLYHLPEN LGNLESLMCL EVEGSGLRGL PVSILCLKRL KTLSCDGCKE 300 MTMPFSSWSS SIEEYNRGYS GLLHLDLSDS NLWELSDGIA HLSSLKTLRL CRTNLESLPA 360 TMNQLRRLTR LELEACRRLK SVPELPSSIN YIDAHDCSSL ETVSKPETRC SMNLCFTFSN 420 CLQLVQTNLF REIVETHSLY QNYYQRPLSF NMSLPGDEIP DWFNYRCRGF SVTVQLPPSW 480 FDNKFLGFAI CAVSDFKGSH NDASDLSFLC HCCLKGNHGR YSFSFTLLDW GFTNERILES 540 NHMFLAYVQW SEYRLIEEGK LVNERYYTEA TFEIVVENRH VFGTVMNPHC ITSCGVRFFH 600 SNYMEEQNLS ITESKSHHDS CESLPVRRRG KEGAGVQLEE SPALAVLPEL ETFSRREWPI 660 PPEGDRSPAG ETKKRPGMKD QMAYSYYMRR SVVTLLNSES WTVVSAELTD YGEAWIKYGD 720 KKLLDAAYPR AYFRCIHQLD QGCQAGKQIQ IVQYTPKMFQ TTYYGNHTCR DIVKDPQQIM 780 GAFDPLSPRK RLRTYFRSIH QFEQGCKAIQ QAQNVQDTPK MSQAIYNGNH TCRDIIKDQQ 840 LVRHASYPDM SWEILCGQCI EESMRYKRPL KPVHSLQLNA GWRKAHAGSL SLRKKIAMHN 900 DSLFLIVRIR DVTASITSAD EKGRITFELQ RYLCLVIRTS LRSSLMSKMH VANLTRIFRE 960 CSATADSLAK CSIPHELGLV CFDNPPAHAA QAFLDDLSSM ADSSSLSSGG RWNYDVFLSF 1020 RGQDTRKIFV GHLHKALDLK AINSFIDSED LCIGNDLSEL LRAIEDSRLY IVVFSQNYAS 1080 SSWCLKELVK ILECASTKKQ SVIPIFYEVD PSDIRKLKGS FGEAFAKHEQ DANADINEVK 1140 KWKIALTEAS KLSGWDSRNY RDDAKFIEKI VEDISEKLAH ISSSKATDAV ECIMLDLSKS 1200 KDVYIDAEAF VRMTKLRLLR IGYYHSIDLN AKEFQLKHHP RDECKQHGLV LLHMRDCRSL 1260 VHLPEKICNL VYLKDLTLSG CSKLYHLPEN LGNLKSLMCL EVEGSGIRKL PVSILCLKRL 1320 KTLSCGGCNN MKEPFSSWPP LIEEYCNYSG LVHLDLSDSN LWELSDGIAQ LSSLKTLELR 1380 GTNLESLPAT MNQLLCLTRL ELEACRRLKS VPELPSSIHF IDAHDCSALE SVAKPNTGCS 1440 MNLCFTFSNC LQLVQTNLFT EIVEIHPHYQ DNNQRSLSFN MSLPGSEVPD WFNNQCRGSS 1500 VTVKLPPNWF DNEFLGFAIC AVSDFKGPHN DASDLSALCH CSLKGNHGLY EFSFTLLDWG 1560 FSTDRILESD HMFLAYVPWS EYRFIEKGKR VNQRYFTEAT FEIVLENKVE RHGFRTVINR 1620 HCITSCGVRL FHGNYIDYME EQTLSISETK SHHDSCDVLT VSRKGKEEVA VQLKESLADH 1680 SSASESKKRL GSKDQTNSYK LRKNMERIRI RSSTFDDGLP WRKYGQKDIL GASYPRAYFR 1740 CTRKYDQGCQ ATKQVQQIQD NPKMYETTYI GQHTCKNIIQ DPKLIIGADA EDVSKSIIDG 1800 GFAALTERTK FQGTLNSDLD FPDLGFEKPF RWVFRLHSTH EAMIAPLSGT LLAAPGLLLC 1860 LLHTCLSAFI LLTSLRLWTA CYYEEVMVVT VSTLLGSIGD SSETDYRSRS HVPLVWSDYR 1920 FIQEGESVNE RYYTESTFEI VLEVGVCILG FRKVATPSHH KLQSGYGGIV VLSQPITSRL 1980 TV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ku7_A | 9e-42 | 15 | 1178 | 8 | 169 | TIR-NB-LRR type resistance protein RPV1 |
5ku7_B | 9e-42 | 15 | 1178 | 8 | 169 | TIR-NB-LRR type resistance protein RPV1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 787 | 793 | PRKRLRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21370.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN153035 | 9e-94 | JN153035.1 Fragaria vesca NBS protein (NBS9) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011470001.1 | 0.0 | PREDICTED: TMV resistance protein N-like isoform X2 | ||||
TrEMBL | A0A2P6SLT3 | 0.0 | A0A2P6SLT3_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004308990.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF26343 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 1e-29 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | mrna21370.1-v1.0-hybrid |