PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21370.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 1983aa    MW: 225528 Da    PI: 6.969
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21370.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.21e-15714770659
                              -EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   6 nWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +W KYG K+  ++ +pr+Y+rC ++   gC++ k+++  +  pk++++tY g+H+++
  mrna21370.1-v1.0-hybrid 714 AWIKYGDKKLLDAAYPRAYFRCIHQldqGCQAGKQIQIVQYTPKMFQTTYYGNHTCR 770
                              7***********************9999**************************996 PP

2WRKY73.92.1e-2317161776259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                               dDg  WrKYGqK++ g+ +pr+Y+rCt +   gC+++k+v++ +++pk+ e+tY g+H+++
  mrna21370.1-v1.0-hybrid 1716 DDGLPWRKYGQKDILGASYPRAYFRCTRKydqGCQATKQVQQIQDNPKMYETTYIGQHTCK 1776
                               8**************************998899**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522003.14E-398156IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.1E-2213129IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010426.65813153IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002555.8E-4314153IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015822.7E-4614186IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.80.10.109.4E-21192425IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520475.96E-22195424No hitNo description
SMARTSM003698.9342365IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:2.20.25.801.2E-15702770IPR003657WRKY domain
SuperFamilySSF1182908.89E-16702770IPR003657WRKY domain
PROSITE profilePS5081116.49704767IPR003657WRKY domain
SMARTSM007744.1E-17709771IPR003657WRKY domain
PfamPF031068.6E-15713770IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-4790833IPR003657WRKY domain
SuperFamilySSF522001.05E-4010071155IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101407.6E-2310121129IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010427.05610121152IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002551.1E-4310131152IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015823.0E-4910131186IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF520589.35E-2611881498IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.104.2E-2011951434IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM003697.213711394IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:2.20.25.808.3E-2417081776IPR003657WRKY domain
PROSITE profilePS5081120.35717101773IPR003657WRKY domain
SuperFamilySSF1182901.02E-2217101776IPR003657WRKY domain
SMARTSM007742.0E-3517151777IPR003657WRKY domain
PfamPF031064.3E-2317161776IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1983 aa     Download sequence    Send to blast
MAASSSLSSG GRWNYDVFLS FRGQDTRKIF VGHLHKALDL KAINAFIDSE DLCKGNDLSE  60
LLRAIEDSRL SVIVFSQDYA SSTWCLKELV KILECAATKK RLVVPIFYEV EPSDIRKLKG  120
SFAEAFVKHE QDSNVDMEEV NRWKIALTEA SNLSGWDSRN YKDDAKFIDK IVEDISEKLV  180
HISSNKATDA VECIMLDLSK SKDIYIDAEA FVKMTRLRLL RIGHNHSIDF NVRDIQSEQL  240
HHPRDLTLSG CLKLYHLPEN LGNLESLMCL EVEGSGLRGL PVSILCLKRL KTLSCDGCKE  300
MTMPFSSWSS SIEEYNRGYS GLLHLDLSDS NLWELSDGIA HLSSLKTLRL CRTNLESLPA  360
TMNQLRRLTR LELEACRRLK SVPELPSSIN YIDAHDCSSL ETVSKPETRC SMNLCFTFSN  420
CLQLVQTNLF REIVETHSLY QNYYQRPLSF NMSLPGDEIP DWFNYRCRGF SVTVQLPPSW  480
FDNKFLGFAI CAVSDFKGSH NDASDLSFLC HCCLKGNHGR YSFSFTLLDW GFTNERILES  540
NHMFLAYVQW SEYRLIEEGK LVNERYYTEA TFEIVVENRH VFGTVMNPHC ITSCGVRFFH  600
SNYMEEQNLS ITESKSHHDS CESLPVRRRG KEGAGVQLEE SPALAVLPEL ETFSRREWPI  660
PPEGDRSPAG ETKKRPGMKD QMAYSYYMRR SVVTLLNSES WTVVSAELTD YGEAWIKYGD  720
KKLLDAAYPR AYFRCIHQLD QGCQAGKQIQ IVQYTPKMFQ TTYYGNHTCR DIVKDPQQIM  780
GAFDPLSPRK RLRTYFRSIH QFEQGCKAIQ QAQNVQDTPK MSQAIYNGNH TCRDIIKDQQ  840
LVRHASYPDM SWEILCGQCI EESMRYKRPL KPVHSLQLNA GWRKAHAGSL SLRKKIAMHN  900
DSLFLIVRIR DVTASITSAD EKGRITFELQ RYLCLVIRTS LRSSLMSKMH VANLTRIFRE  960
CSATADSLAK CSIPHELGLV CFDNPPAHAA QAFLDDLSSM ADSSSLSSGG RWNYDVFLSF  1020
RGQDTRKIFV GHLHKALDLK AINSFIDSED LCIGNDLSEL LRAIEDSRLY IVVFSQNYAS  1080
SSWCLKELVK ILECASTKKQ SVIPIFYEVD PSDIRKLKGS FGEAFAKHEQ DANADINEVK  1140
KWKIALTEAS KLSGWDSRNY RDDAKFIEKI VEDISEKLAH ISSSKATDAV ECIMLDLSKS  1200
KDVYIDAEAF VRMTKLRLLR IGYYHSIDLN AKEFQLKHHP RDECKQHGLV LLHMRDCRSL  1260
VHLPEKICNL VYLKDLTLSG CSKLYHLPEN LGNLKSLMCL EVEGSGIRKL PVSILCLKRL  1320
KTLSCGGCNN MKEPFSSWPP LIEEYCNYSG LVHLDLSDSN LWELSDGIAQ LSSLKTLELR  1380
GTNLESLPAT MNQLLCLTRL ELEACRRLKS VPELPSSIHF IDAHDCSALE SVAKPNTGCS  1440
MNLCFTFSNC LQLVQTNLFT EIVEIHPHYQ DNNQRSLSFN MSLPGSEVPD WFNNQCRGSS  1500
VTVKLPPNWF DNEFLGFAIC AVSDFKGPHN DASDLSALCH CSLKGNHGLY EFSFTLLDWG  1560
FSTDRILESD HMFLAYVPWS EYRFIEKGKR VNQRYFTEAT FEIVLENKVE RHGFRTVINR  1620
HCITSCGVRL FHGNYIDYME EQTLSISETK SHHDSCDVLT VSRKGKEEVA VQLKESLADH  1680
SSASESKKRL GSKDQTNSYK LRKNMERIRI RSSTFDDGLP WRKYGQKDIL GASYPRAYFR  1740
CTRKYDQGCQ ATKQVQQIQD NPKMYETTYI GQHTCKNIIQ DPKLIIGADA EDVSKSIIDG  1800
GFAALTERTK FQGTLNSDLD FPDLGFEKPF RWVFRLHSTH EAMIAPLSGT LLAAPGLLLC  1860
LLHTCLSAFI LLTSLRLWTA CYYEEVMVVT VSTLLGSIGD SSETDYRSRS HVPLVWSDYR  1920
FIQEGESVNE RYYTESTFEI VLEVGVCILG FRKVATPSHH KLQSGYGGIV VLSQPITSRL  1980
TV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A9e-421511788169TIR-NB-LRR type resistance protein RPV1
5ku7_B9e-421511788169TIR-NB-LRR type resistance protein RPV1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1787793PRKRLRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21370.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1530359e-94JN153035.1 Fragaria vesca NBS protein (NBS9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011470001.10.0PREDICTED: TMV resistance protein N-like isoform X2
TrEMBLA0A2P6SLT30.0A0A2P6SLT3_ROSCH; Putative transcription factor WRKY family
STRINGXP_004308990.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2634323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-29WRKY DNA-binding protein 70