PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21311.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25944.3 Da PI: 8.4829 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.7e-42 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq mrna21311.1-v1.0-hybrid 52 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQ 137 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 +++l+ael++++ e mrna21311.1-v1.0-hybrid 138 VQSLQAELNTVRGE 151 *********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.756 | 51 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-42 | 52 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSRDRERFDF DEIGKKLKRE IDASNSSSAH LHHQMGRRHM LGPPGTLNTI TPCAACKLLR 60 RRCAQECPFS PYFSPHEPQK FASVHKVFGA SNVSKMLMEV PESQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISALQQQVQS LQAELNTVRG EILKFKYREA NLMDPSSHHH QVAALFSTTT 180 TSGGAVSVAS LPPSTQPPPP PPPPPLPPTS SSSSMYTQPN SATDYSTLSS ENVSYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-44 | 44 | 159 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-44 | 44 | 159 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21311.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307714.1 | 1e-176 | PREDICTED: LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 1e-83 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2P6SLM5 | 1e-137 | A0A2P6SLM5_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004307714.1 | 1e-176 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 9e-83 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | mrna21311.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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