PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21248.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 374aa    MW: 42670.6 Da    PI: 6.2623
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21248.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.73.3e-55481771129
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyW 83 
                              +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++  ++ ++e+ +wyfFs++dkky+tg+r+nrat++g+W
  mrna21248.1-v1.0-hybrid  48 VPPGFRFHPTDEELVDYYLRKKVTARRIDL-DVIKDVDLYKIEPWDLQElcRIGTDEQsDWYFFSHKDKKYPTGTRTNRATAAGFW 132
                              69****************************.9***************954555554445*************************** PP

                      NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                              katg+dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  mrna21248.1-v1.0-hybrid 133 KATGRDKAIYA-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 177
                              ***********.8899****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-5944216IPR003441NAC domain
PROSITE profilePS5100558.52248216IPR003441NAC domain
PfamPF023657.0E-2949176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MEGAEEMVGT RNGDEVDDRA TMPHLCNPSF LAGLNSKKLD NMNTFSHVPP GFRFHPTDEE  60
LVDYYLRKKV TARRIDLDVI KDVDLYKIEP WDLQELCRIG TDEQSDWYFF SHKDKKYPTG  120
TRTNRATAAG FWKATGRDKA IYAKHDLIGM RKTLVFYKGR APNGQKSDWI MHEYRLETDE  180
NGAPQASTII TLTNFLHCST SNAQEEGWVV CRVFKKKLPS MRRMSEHESP CWYDEHVSFM  240
PDLDSPNHNN SNSSMNNQMA YHGHFPNYPC KKELDHLPFQ HHVPNEHFFQ LPLLDSPKLL  300
LQSSSSAAVS SNSMTAAAAY SIDINQNFHA VYGNNSNELQ AVDDDQLTDW RVLDKFVASQ  360
LSQDDVSKGN SYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-484721714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21248.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024197032.10.0NAC domain-containing protein 7-like
SwissprotQ9FWX21e-130NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A2P6SMC30.0A0A2P6SMC3_ROSCH; Putative transcription factor NAM family
STRINGEMJ213311e-180(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126933106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-110NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]