PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21248.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 374aa MW: 42670.6 Da PI: 6.2623 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.7 | 3.3e-55 | 48 | 177 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPtdeelv++yL+kkv++++++l +vik+vd+yk+ePwdL++ ++ ++e+ +wyfFs++dkky+tg+r+nrat++g+W mrna21248.1-v1.0-hybrid 48 VPPGFRFHPTDEELVDYYLRKKVTARRIDL-DVIKDVDLYKIEPWDLQElcRIGTDEQsDWYFFSHKDKKYPTGTRTNRATAAGFW 132 69****************************.9***************954555554445*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 katg+dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle mrna21248.1-v1.0-hybrid 133 KATGRDKAIYA-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 177 ***********.8899****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-59 | 44 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.522 | 48 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-29 | 49 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MEGAEEMVGT RNGDEVDDRA TMPHLCNPSF LAGLNSKKLD NMNTFSHVPP GFRFHPTDEE 60 LVDYYLRKKV TARRIDLDVI KDVDLYKIEP WDLQELCRIG TDEQSDWYFF SHKDKKYPTG 120 TRTNRATAAG FWKATGRDKA IYAKHDLIGM RKTLVFYKGR APNGQKSDWI MHEYRLETDE 180 NGAPQASTII TLTNFLHCST SNAQEEGWVV CRVFKKKLPS MRRMSEHESP CWYDEHVSFM 240 PDLDSPNHNN SNSSMNNQMA YHGHFPNYPC KKELDHLPFQ HHVPNEHFFQ LPLLDSPKLL 300 LQSSSSAAVS SNSMTAAAAY SIDINQNFHA VYGNNSNELQ AVDDDQLTDW RVLDKFVASQ 360 LSQDDVSKGN SYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 47 | 217 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21248.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024197032.1 | 0.0 | NAC domain-containing protein 7-like | ||||
Swissprot | Q9FWX2 | 1e-130 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | A0A2P6SMC3 | 0.0 | A0A2P6SMC3_ROSCH; Putative transcription factor NAM family | ||||
STRING | EMJ21331 | 1e-180 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-110 | NAC 007 |
Link Out ? help Back to Top | |
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Phytozome | mrna21248.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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