PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna21167.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 216aa MW: 24354.6 Da PI: 4.3899 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 103 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k r++lg+f+t +Aaka++ a+ kl+g mrna21167.1-v1.0-hybrid 103 HYRGVRRRP-WGKFAAEIRDP---ArKGSRVWLGTFDTDVDAAKAYDCAAFKLRG 153 7********.**********8...4445**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 102 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-36 | 103 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 103 | 162 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.579 | 103 | 161 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.06E-28 | 103 | 161 | No hit | No description |
Pfam | PF00847 | 2.0E-12 | 103 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-13 | 104 | 115 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-13 | 143 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MAATQEQDES TLELIRQHLL GDFTFTDNFI TNLNFDQTPE LYFQPIIKSE YSISESESTS 60 PVSSCLNPKP EPVTEEEPMS SEPKRKSSSS SNSSSSTGEV SRHYRGVRRR PWGKFAAEIR 120 DPARKGSRVW LGTFDTDVDA AKAYDCAAFK LRGRKAILNF PLEAGESNPP SNTGRKRRKA 180 VKQEEEEEEE EEEEKAPEPE ELEVQSWVDW DGEEA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-27 | 102 | 162 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 173 | 179 | GRKRRKA |
2 | 173 | 182 | GRKRRKAVKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna21167.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307780.1 | 1e-156 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
Swissprot | Q9LY05 | 1e-49 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A3S8T927 | 1e-128 | A0A3S8T927_FRAAN; Transcription factor ERF74 | ||||
STRING | XP_004307780.1 | 1e-156 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07580.1 | 4e-44 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna21167.1-v1.0-hybrid |
Publications ? help Back to Top | |||
---|---|---|---|
|