PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21166.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 291aa    MW: 31411.2 Da    PI: 7.5463
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21166.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.6e-21120170255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp+++g   r++lg+f+ta eAaka++ a+ kl+g
  mrna21166.1-v1.0-hybrid 120 HYRGVRRRP-WGKYAAEIRDPNKRG--SRVWLGTFDTAVEAAKAYDLAAFKLRG 170
                              7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-32119179IPR001471AP2/ERF domain
PROSITE profilePS5103224.829120178IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-23120180IPR016177DNA-binding domain
PfamPF008471.6E-14120170IPR001471AP2/ERF domain
CDDcd000182.69E-31120178No hitNo description
SMARTSM003807.0E-39120184IPR001471AP2/ERF domain
PRINTSPR003671.4E-10121132IPR001471AP2/ERF domain
PRINTSPR003671.4E-10144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MEQASALDMI SQHLLSEFSS MESFISSLNN CTSIIDQSPQ ADDCLVSDYL LPSEPEFEFE  60
TKPQIVHSPK KNSTLSHRKP AINVAIPAKP VTATVTAVAP AETSAAVTVS RSSSENEARH  120
YRGVRRRPWG KYAAEIRDPN KRGSRVWLGT FDTAVEAAKA YDLAAFKLRG SKAILNFPLE  180
INSNLAAAQP LQASVVGRKR RRSESAESNS EDVGRNKAIK KEEDTISSGN STSPIGSSIS  240
SAAAAVNCPL TPSNWTSIWD SKDLDGIFSV PPLSPLSPHP CFGYNQLLIH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-30117183268ATERF1
3gcc_A5e-30117183268ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197201RKRRR
2197202RKRRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21166.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307779.10.0PREDICTED: ethylene-responsive transcription factor ERF105-like
TrEMBLA0A3Q8TA140.0A0A3Q8TA14_FRAAN; Transcription factor ERF76
STRINGXP_004307779.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-43ERF family protein