PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21165.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 276aa    MW: 30635.9 Da    PI: 6.1791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21165.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-19142193256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                              +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t eeAa a+++a+ +++g+
  mrna21165.1-v1.0-hybrid 142 HYRGVRQRP-WGKFAAEIRDPKKNG--ARVWLGTYETSEEAAVAYDRAAYRMRGA 193
                              7********.***********9998..**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.7E-32141201IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23142202IPR016177DNA-binding domain
SMARTSM003801.7E-35142206IPR001471AP2/ERF domain
CDDcd000184.00E-31142201No hitNo description
PROSITE profilePS5103223.973142200IPR001471AP2/ERF domain
PfamPF008476.8E-14142192IPR001471AP2/ERF domain
PRINTSPR003672.1E-10143154IPR001471AP2/ERF domain
PRINTSPR003672.1E-10166182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MTELNYLDDH FHLHPNLIID PLTEQWGDLP FKFDDSEDML VYNSLWNAFS SDWSTPSMED  60
VKPEPAACNY FDELHQILQP QDDQVSINMS APTELSSPET ESSSTVSQTS YDQIQEEVPT  120
PKVQNKAVVL GGGTSSVSRG RHYRGVRQRP WGKFAAEIRD PKKNGARVWL GTYETSEEAA  180
VAYDRAAYRM RGAKALLNFP HRIGLNEPPP VRVTGKRKDP EAGNSPTSTT TRTPNLNKRT  240
KASLASPAPD MGGDDHARVN VHHTRHNSNA GLLVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-35138207170ATERF1
3gcc_A6e-35138207170ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21165.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307778.10.0PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A3Q8TBB01e-161A0A3Q8TBB0_FRAAN; Transcription factor ERF72
STRINGXP_004307778.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-47ethylene responsive element binding factor 2