PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21159.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB_related
Protein Properties Length: 360aa    MW: 38882.9 Da    PI: 10.2838
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21159.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14105149347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+  ++ + k+lG+g+W+ Iar + ++Rt+ q+ s+ qky
  mrna21159.1-v1.0-hybrid 105 PWTEEEHRVFLAGLKKLGKGDWRGIARNFVTTRTPTQVASHAQKY 149
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129421.43598154IPR017930Myb domain
SuperFamilySSF466893.95E-17100153IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-18101153IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.2E-12102148IPR009057Homeodomain-like
SMARTSM007171.5E-11102152IPR001005SANT/Myb domain
CDDcd001676.52E-10105150No hitNo description
PfamPF002492.3E-11105149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MVKESARKCS HCGHNGHNSR TCNLLGHGVN NNNKGICLKL FGVNIMERQE DSIKKSYSMG  60
NLQAAGNGDQ NNNINVGADD AGYLSDGLIH NKKRKAAHER KKGRPWTEEE HRVFLAGLKK  120
LGKGDWRGIA RNFVTTRTPT QVASHAQKYF LRQATNDKRK RRTSLFDMHF KELSEQYAHQ  180
DSPLSPTAKT AEASSCSSSS PGSTSKVLPQ ITTITNSPQA NMPSQVLNRF PHLCLDSPPA  240
VAQMPASSCS VPTYAPVIPY MVGMPGTVPY TPAMHYGGPT FHYMLKTQGG NFSTCQPVIS  300
HPSGIPSSSR SVPSSPLMGV HRTNSSITKK DALELKIGQP QPSQGANLSS SSSGAIRVT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21159.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309020.10.0PREDICTED: myb-like protein J isoform X1
TrEMBLA0A2P6SM510.0A0A2P6SM51_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004309020.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.15e-66MYB_related family protein