PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21124.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 27256.6 Da PI: 9.2022 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.2 | 7.1e-33 | 161 | 219 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+ mrna21124.1-v1.0-hybrid 161 LDDGYKWRKYGQKVVKNTQHPRSYYRCTMDNCRVKKRVERLAEDPRMVITTYEGRHAHS 219 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-34 | 146 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-29 | 153 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.344 | 156 | 221 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-37 | 161 | 220 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 162 | 218 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901141 | Biological Process | regulation of lignin biosynthetic process | ||||
GO:1904369 | Biological Process | positive regulation of sclerenchyma cell differentiation | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MLNQRGLFDQ NQDQAPIQMG FFSYPPNNLT FSSLGCQQSV KALSSLPSSL GSDDHHASST 60 NLSETLIPSL NTPQKHRETH ITSDFGGSQL LSLQRSSANL WAWGDQVSEC LSSKRSSSDI 120 HDHHHVGLGV SEMKMKKIKA IRRKVREPRF CFKTMSEVDV LDDGYKWRKY GQKVVKNTQH 180 PRSYYRCTMD NCRVKKRVER LAEDPRMVIT TYEGRHAHSP SHDLEDSESP SRLNNFFW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 153 | 218 | 9 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 153 | 218 | 9 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21124.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288129.1 | 0.0 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011464710.1 | 0.0 | PREDICTED: probable WRKY transcription factor 13 | ||||
Refseq | XP_011464713.1 | 0.0 | PREDICTED: probable WRKY transcription factor 13 | ||||
Swissprot | Q9SVB7 | 3e-60 | WRK13_ARATH; Probable WRKY transcription factor 13 | ||||
TrEMBL | A0A2P6RRK4 | 1e-160 | A0A2P6RRK4_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004288129.1 | 1e-180 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4079 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39410.1 | 5e-54 | WRKY DNA-binding protein 13 |
Link Out ? help Back to Top | |
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Phytozome | mrna21124.1-v1.0-hybrid |