PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21091.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | ERF | ||||||||
Protein Properties | Length: 388aa MW: 41502.5 Da PI: 7.3265 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.2e-20 | 190 | 239 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae Aa+a++ a+++++g mrna21091.1-v1.0-hybrid 190 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAAQAYDTAALRFRG 239 8********.**********66.....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-32 | 189 | 248 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-22 | 190 | 248 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.8E-13 | 190 | 239 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.93E-24 | 190 | 249 | No hit | No description |
SMART | SM00380 | 1.2E-35 | 190 | 253 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.646 | 190 | 247 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 191 | 202 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-11 | 213 | 229 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MCFLKVANPS RDRDDDRAAA AGQGNETPQT EEQRDLIEEW LLFEPLLFSQ QQRRGSGGGG 60 GIMASSSMLL RLDREREMSA MVSALTHVVT GEEQAHEVDD LNSSPGGVGS KRGREDDGGG 120 GGGGGEHVTE SVSRLCRAFG DFPQQGSSSS SSVLPENSIT RNRSTNVTPG IQTAYEYRAP 180 QISEQPTRRK YRGVRQRPWG KWAAEIRDPF KAARVWLGTF DTAEAAAQAY DTAALRFRGN 240 KAKLNFPENV RLRSLPSSAA ENNPMTSQPT VSGSPNALLS IPTSTEAIVH SHAATSFQQQ 300 RAPMNLYDQM VLLSSSSSPS ATTSSSTLAS SVSSTSSSPP PHVFSSRFIA QSTSPVQLRQ 360 APGDRSGGAD SSMQHQWSTS SGHHSTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 189 | 250 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21091.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288079.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1 | ||||
TrEMBL | A0A3Q8TD97 | 0.0 | A0A3Q8TD97_FRAAN; Transcription factor ERF92 | ||||
STRING | XP_004288079.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4933 | 32 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-28 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | mrna21091.1-v1.0-hybrid |