PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21091.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 388aa    MW: 41502.5 Da    PI: 7.3265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21091.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-20190239255
                      AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+W+AeIrd +     + +r++lg+f+tae Aa+a++ a+++++g
  mrna21091.1-v1.0-hybrid 190 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEAAAQAYDTAALRFRG 239
                              8********.**********66.....56*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-32189248IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22190248IPR016177DNA-binding domain
PfamPF008472.8E-13190239IPR001471AP2/ERF domain
CDDcd000181.93E-24190249No hitNo description
SMARTSM003801.2E-35190253IPR001471AP2/ERF domain
PROSITE profilePS5103225.646190247IPR001471AP2/ERF domain
PRINTSPR003672.1E-11191202IPR001471AP2/ERF domain
PRINTSPR003672.1E-11213229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MCFLKVANPS RDRDDDRAAA AGQGNETPQT EEQRDLIEEW LLFEPLLFSQ QQRRGSGGGG  60
GIMASSSMLL RLDREREMSA MVSALTHVVT GEEQAHEVDD LNSSPGGVGS KRGREDDGGG  120
GGGGGEHVTE SVSRLCRAFG DFPQQGSSSS SSVLPENSIT RNRSTNVTPG IQTAYEYRAP  180
QISEQPTRRK YRGVRQRPWG KWAAEIRDPF KAARVWLGTF DTAEAAAQAY DTAALRFRGN  240
KAKLNFPENV RLRSLPSSAA ENNPMTSQPT VSGSPNALLS IPTSTEAIVH SHAATSFQQQ  300
RAPMNLYDQM VLLSSSSSPS ATTSSSTLAS SVSSTSSSPP PHVFSSRFIA QSTSPVQLRQ  360
APGDRSGGAD SSMQHQWSTS SGHHSTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21189250163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21091.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288079.10.0PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1
TrEMBLA0A3Q8TD970.0A0A3Q8TD97_FRAAN; Transcription factor ERF92
STRINGXP_004288079.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-28ethylene response factor 110