PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna21039.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19016.6 Da PI: 5.9731 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.8 | 1.1e-44 | 9 | 108 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +Ca+Ck+lrr+Ca+dC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar+rdPvyG+vg i+ lq+q mrna21039.1-v1.0-hybrid 9 PCASCKLLRRRCAQDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRTDAVSSLVYEANARVRDPVYGCVGAISCLQNQ 94 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 +++l+ +la++++e mrna21039.1-v1.0-hybrid 95 VSELQMQLAVAQAE 108 *********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.851 | 8 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-44 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MAGGNGTSPC ASCKLLRRRC AQDCIFAPYF PSDDPHKFAI VHKVFGASNV SKMLQELPVH 60 QRTDAVSSLV YEANARVRDP VYGCVGAISC LQNQVSELQM QLAVAQAEIL CIQMQQESTV 120 LPSQPIDSCI DNERTYFLNN SLPQYLNFPS SSSSNVIHDS LKMEGIFGHD MVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-49 | 8 | 122 | 10 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-49 | 8 | 122 | 10 | 127 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna21039.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011469944.1 | 1e-127 | PREDICTED: LOB domain-containing protein 12-like | ||||
Swissprot | Q8LBW3 | 3e-74 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2P6SLE9 | 1e-115 | A0A2P6SLE9_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_008233810.1 | 3e-98 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-76 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna21039.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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