PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21039.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 174aa    MW: 19016.6 Da    PI: 5.9731
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21039.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260142.81.1e-4491081100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +Ca+Ck+lrr+Ca+dC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r+da+sslvyeA+ar+rdPvyG+vg i+ lq+q
  mrna21039.1-v1.0-hybrid   9 PCASCKLLRRRCAQDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRTDAVSSLVYEANARVRDPVYGCVGAISCLQNQ 94 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+ +la++++e
  mrna21039.1-v1.0-hybrid  95 VSELQMQLAVAQAE 108
                              *********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8518109IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-449106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAGGNGTSPC ASCKLLRRRC AQDCIFAPYF PSDDPHKFAI VHKVFGASNV SKMLQELPVH  60
QRTDAVSSLV YEANARVRDP VYGCVGAISC LQNQVSELQM QLAVAQAEIL CIQMQQESTV  120
LPSQPIDSCI DNERTYFLNN SLPQYLNFPS SSSSNVIHDS LKMEGIFGHD MVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-49812210127LOB family transfactor Ramosa2.1
5ly0_B6e-49812210127LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna21039.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469944.11e-127PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW33e-74LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2P6SLE91e-115A0A2P6SLE9_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_008233810.13e-98(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-76LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]