PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna21008.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

LBD

Protein Properties

Length: 180aa MW: 19316.8 Da PI: 7.8534

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna21008.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124	7.8e-39	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+l+r+C++ C++ap+f +++p kfa vhk+FGasnv+k+l+++pee+red++ssl+yeAe+r+rdPvyG++g i lq + mrna21008.1-v1.0-hybrid 12 SCAACKLLKRRCVPTCIFAPHFRSDEPLKFAKVHKVFGASNVSKILSEVPEEQREDTVSSLAYEAEVRLRDPVYGCIGAIAMLQGK 97 6*********************************************************************************** PP DUF260 87 leqlkaelallkee 100 + +l+++la ++++ mrna21008.1-v1.0-hybrid 98 MVELQHDLAIARAR 111 ******999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.594	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.6E-39	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKGTHAPRSS SSCAACKLLK RRCVPTCIFA PHFRSDEPLK FAKVHKVFGA SNVSKILSEV 60 PEEQREDTVS SLAYEAEVRL RDPVYGCIGA IAMLQGKMVE LQHDLAIARA RLSSYGHPTS 120 SVSSTSASSY AMLEDHLGEA NFAGFPACSG FSNGFSQSST EFISQHGTTG GFSYPPYIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-44	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	8e-44	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna21008.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004307677.1	1e-131	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	4e-62	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2P6SLD7	1e-107	A0A2P6SLD7_ROSCH; Putative transcription factor AS2-LOB family
STRING	XP_004307677.1	1e-130	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	5e-64	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	mrna21008.1-v1.0-hybrid

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]