PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna21001.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 27923.2 Da PI: 4.9146 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+++G+++W++I++ ++ gR++k+c++rw + mrna21001.1-v1.0-hybrid 11 KGSWSPQEDATLIKLVAEHGPRNWSLISSGIP-GRSGKSCRLRWCNQ 56 799*****************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.8e-17 | 64 | 107 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++T+ Ed +v a++++G++ W+tIar ++ gRt++ +k++w++ mrna21001.1-v1.0-hybrid 64 KPFTPAEDAAIVTAHALHGNK-WATIARLLP-GRTDNAIKNHWNST 107 68*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.347 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.24E-29 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-16 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-18 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.11E-15 | 13 | 55 | No hit | No description |
SMART | SM00717 | 1.2E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.486 | 62 | 112 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.6E-14 | 64 | 107 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 65 | 111 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.32E-12 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MSAGAGDNRV KGSWSPQEDA TLIKLVAEHG PRNWSLISSG IPGRSGKSCR LRWCNQLSPD 60 VQHKPFTPAE DAAIVTAHAL HGNKWATIAR LLPGRTDNAI KNHWNSTLRR RRLAESSSTS 120 SESMKRLIVG GGGAEPEMKR QCLRGAEEES GFKAVTAGVE GVLTSLTLSP PGEKVGDDVV 180 LKSEEEEVEE EEENEEHQEE AVDDGEKCTV EMEETCLMSM MQRMIAQEVR NYIESLRAEN 240 GLAFGLQSAV HDPKC* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-37 | 10 | 111 | 3 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-36 | 10 | 111 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-36 | 10 | 111 | 57 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-37 | 10 | 111 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-37 | 10 | 111 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna21001.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024164121.1 | 1e-137 | transcription factor MYB73-like | ||||
Swissprot | O23160 | 1e-53 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2P6SLB7 | 1e-135 | A0A2P6SLB7_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004308944.1 | 1e-139 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11600 | 29 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G67300.1 | 2e-50 | myb domain protein r1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna21001.1-v1.0-hybrid |
Publications ? help Back to Top | |||
---|---|---|---|
|