PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20982.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 656aa    MW: 72132 Da    PI: 7.2728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20982.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06253273526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C+ f++ G C+ Gd C +aHg
  mrna20982.1-v1.0-hybrid 253 PCPEFRK-GSCQKGDVCEYAHG 273
                              8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484039.64E-1517138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1519162IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00116191IPR002110Ankyrin repeat
PROSITE profilePS500888.7636185IPR002110Ankyrin repeat
PROSITE profilePS5029715.9161141IPR020683Ankyrin repeat-containing domain
PfamPF127967.9E-961128IPR020683Ankyrin repeat-containing domain
CDDcd002043.97E-1363159No hitNo description
SMARTSM002480.01796128IPR002110Ankyrin repeat
PROSITE profilePS5008810.07296131IPR002110Ankyrin repeat
PROSITE profilePS5010312.108248275IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4248274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4253274IPR000571Zinc finger, CCCH-type
SMARTSM0035630283306IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.103283307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MESEFQKQNG AGLNKSSVLV ELSASDNLDA FRSEVEEKGL HVDEASFWYG RRIGSKKMGF  60
EERTPLMIAA MFGSTKVLRY IIESGKVDVN RSCGSDRVTA LHCATAGGSS SSLEVVKLLL  120
DASADANCVN ANGNKPVDLI APAWKSSCNL RRKAMEMLLK GDMSLLGSDI DDQEVPSLQL  180
LKEGSEKKEY PIDIALPDIN NGIYGSDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR  240
RRDPRKYPYS CVPCPEFRKG SCQKGDVCEY AHGVFESWLH PAQYRTRLCK DETGCTRKVC  300
FFAHKPEELR PVYASTGSAM PSPRSMSACA GDMTTMSPLA LGSPSLSMPT TSTPPMSPIA  360
SSSPKNGGLW QNKVNLTPPA LQLPGSRLKS ASSARDLDLE MEFLGRDHAN QQQQQQHMWD  420
EMSRLSSPSC YNNSRMGELK PTNLDDVFGS FDPSLLSQLQ ALSTQSQLQS SPGLQSRQNM  480
NQLRSSYPSN LSSSPVRKPS SFGLDSPAAL AAAVINSRSA AFAKRSHSFI DRGAVNHLQG  540
FTSAANSNTM MSSSDWNSPS GKLDWGIQGD DLNKLRKSAS FGFRSNNAGS PNNMMQSALD  600
EPDVSWVNSL VKDVSSERSE MFGAERQNYR HLNKGVHEML PSWAEQMYIE QEQRA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20982.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307656.10.0PREDICTED: zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2P6SLB20.0A0A2P6SLB2_ROSCH; Putative transcription factor C3H family
STRINGXP_004307656.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein