PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20971.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-X1
Protein Properties Length: 825aa    MW: 92253.9 Da    PI: 8.3332
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20971.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.25.5e-06179197120
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                              CG H+C  lCH+GpCp+Cp+
  mrna20971.1-v1.0-hybrid 179 CG-HRCLLLCHPGPCPSCPK 197
                              **.***************96 PP
2zf-NF-X117.11.2e-05392411120
                 zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                              CG+H+C++ C+ G+CppC++
  mrna20971.1-v1.0-hybrid 392 CGRHPCKRRCCDGDCPPCSE 411
                              ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.48E-664138No hitNo description
PROSITE patternPS01359066132IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.24E-6167215No hitNo description
SMARTSM004380.012179197IPR000967Zinc finger, NF-X1-type
PfamPF014220.0015179196IPR000967Zinc finger, NF-X1-type
CDDcd060087.66E-7221259No hitNo description
SMARTSM004380.013231250IPR000967Zinc finger, NF-X1-type
PfamPF014220.0012231249IPR000967Zinc finger, NF-X1-type
CDDcd060086.77E-9275318No hitNo description
SMARTSM004384.2E-4285304IPR000967Zinc finger, NF-X1-type
PfamPF014220.0014285303IPR000967Zinc finger, NF-X1-type
CDDcd060081.69E-8329378No hitNo description
SMARTSM004380.63339359IPR000967Zinc finger, NF-X1-type
PfamPF014220.0021339358IPR000967Zinc finger, NF-X1-type
CDDcd060081.93E-4382413No hitNo description
SMARTSM004380.011392411IPR000967Zinc finger, NF-X1-type
PfamPF014220.0018392410IPR000967Zinc finger, NF-X1-type
SMARTSM0043888435456IPR000967Zinc finger, NF-X1-type
PfamPF01422120445455IPR000967Zinc finger, NF-X1-type
SMARTSM00438160464509IPR000967Zinc finger, NF-X1-type
PfamPF0142221464473IPR000967Zinc finger, NF-X1-type
SMARTSM0043811546579IPR000967Zinc finger, NF-X1-type
PfamPF014220.091546557IPR000967Zinc finger, NF-X1-type
SMARTSM004380.085589607IPR000967Zinc finger, NF-X1-type
PfamPF014220.12590606IPR000967Zinc finger, NF-X1-type
SMARTSM004386652673IPR000967Zinc finger, NF-X1-type
PfamPF014223.3654666IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 825 aa     Download sequence    Send to blast
MNSDSDTDSD HSQSGSGSGP ARRHSDLSDS IFRSYLEFTG KASATNADLS KIQSFLTSSS  60
SGALSCLICL ERIRPGDPTW SCTSVCFSVF HLFCIQSWAR QASDLSALRA STRLPISQSK  120
AAEVSLWNCP KCRVEYTHSQ IPKIYKCFCG KLENPPSDDP WILPHSCGEV CNRPLKHNCG  180
HRCLLLCHPG PCPSCPKLVE ARCFCGNVQD VRRCGFKNFS CNNACEKKLM CGVHCCAEIC  240
HEGPCPPCRV RGKYRCQCGK REEEKECCER LDFRCEEECE KMLGCGQHKC SKGCHSGECG  300
PCPFQGKRTC PCGKRVHEGL SCKDAVPLCG ATCDKMLSCG YHRCPERCHR GQCLETCRSV  360
VTKWCRCGSL KKEVPCHQDL TCERKCQRLR DCGRHPCKRR CCDGDCPPCS EVPCGTEMDQ  420
KPPRCRKPCP ITPLCRHGPN SKPHKCHYGA CHPCKLLCEE EYPCGHKCQL RCHGPKPPPN  480
PEFTLKPKKK KSFHPPECTP GSPCPPCPEL VWRSCVGQHF AADRMMVCSD KSLYSCDNLC  540
GNPLPCGNHF CPKTCHPLKN QSLPSAQQAR SEPCEVCHLP CEKERAPACI HPCPLSCHPG  600
DCPPCKVLVK RSCHCGSMVH VFECIYYNSL SEKEQTAVRS CKGLCHRKLP YCTHLCPETC  660
HPGQCPSPEK CSKKVTVRCG CQTLKREWLC HDVQAAYRNA GTDPKDITKN QFGLGLLPCD  720
SNCKSKQKIV DSELHSRRPK VVEVKEPDTD KPVPKRKRRR ERGQEVPQIS TLQKVFAHVK  780
RFLLVVTLLV LLVTASYYGY KGLLRLSDWM NEVEEKRQRR HPGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1754759KRKRRR
2755759RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna20971.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308935.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2 isoform X2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2P6SLA00.0A0A2P6SLA0_ROSCH; Putative chromatin regulator PHD family
STRINGXP_004308935.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102253237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors