PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna20912.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33513.2 Da PI: 6.9785 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.7 | 2.7e-08 | 15 | 54 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 WT+eE +l+ a + + + +W +Iar+++ g+t ++ mrna20912.1-v1.0-hybrid 15 DWTKEENKLFESALAIYDEKtpdRWVKIARMIP-GKTVFDV 54 6********************************.***8776 PP | |||||||
2 | Myb_DNA-binding | 42.5 | 1.5e-13 | 116 | 160 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+++++++ q+G+g+W++I+r + +t+ q+ s+ qky mrna20912.1-v1.0-hybrid 116 PWTEDEHLRFLKGLLQYGKGDWRSISRNFVMSKTPTQVASHAQKY 160 7*****************************899***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.222 | 11 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-9 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-4 | 12 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.8E-13 | 14 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-6 | 15 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 16.922 | 108 | 165 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 108 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.87E-15 | 111 | 165 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-17 | 112 | 164 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.0E-9 | 113 | 163 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.06E-8 | 116 | 161 | No hit | No description |
Pfam | PF00249 | 9.2E-11 | 116 | 160 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MADTNWFLQE SQSSDWTKEE NKLFESALAI YDEKTPDRWV KIARMIPGKT VFDVFKQYKE 60 LEDDVTNIEA GLVEIPGYQQ TSAFTLELVD DQNFDANRKR SAAARGSDQE RKKGIPWTED 120 EHLRFLKGLL QYGKGDWRSI SRNFVMSKTP TQVASHAQKY FMRQHSGGKD KRRPSIHDIT 180 TVNLTSTTTT SPSQNNNRSP LDQSPPPEHN SKSTESPRVV LDWNIRPNDG VAGAMIFGAT 240 HGDLFESSSP YDVGSPEDLK LHWQNLYAST THYAAHARSP SSMYLMHPSR HQIHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-15 | 16 | 83 | 11 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00489 | DAP | Transfer from AT5G05790 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna20912.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307612.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 5e-87 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2P6SKY8 | 0.0 | A0A2P6SKY8_ROSCH; Putative transcription factor MYB/SANT family | ||||
STRING | XP_004307612.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05790.1 | 1e-79 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna20912.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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